LOC103027860 (cacnb2b,LOC108437228,LOC107664070,LOC107713974,LOC107751551,LOC107585874)


Basic Information

Item Value
gene id LOC103027860
gene name cacnb2b,LOC108437228,LOC107664070,LOC107713974,LOC107751551,LOC107585874
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 12472804 ~ 12572147 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191048
GGAGCTGTAGCTAAGGAGGAGCTCAaagctctgtttactctgtgtacagcttctgtttacagagctagttagcgttagctacctTATGTAAGTAACTCTAGGTTTAAACTAgagtttgacaaggcagctcaactcgacagaacaccagtcaAAGTGGGCGCCGTTTCTgtcggattttatgatatagagcggactctggggcttcgacatggtgaaactgcccaagcactGAGTCACCAAGTCTGGGaAGTTCAACAATGACTGGTGGATTGGGCGACCGGTGAAGGAGGGAGGGGAGGTGGGTTTCATCCCCAGTCCGGTTAACCTGGAGACCATTCTCATCAGAAGAGAGGTGCAAGCCAGGAAGGCGGCCAAAGCCCTGGCCAACAAAGCAGCAAGTGCTGCCAAAGATGATATGAACGCGAAGAAAGTTACTCCTCCGACGACAGTTCAGCAAGTAAAAAAGAAATCGGGGGAGCAACTGGCTGCATATGACGTTGTGCCTTCCATGCGCCCCGTGGTGCTGATGGGGCCTTCCCTCAAGGGCTATGAGgttacAGACATGATGCAAAAGGCTctgtttgattttttaaaacacagatttgAAGGCAGGTATGTAATCACACCAGGCGTCATTAGATTCTGCTTATGTAGCCATAAAATTGTTTct
>TU191049
CGGATCACTTTGCACGGTTTGTGTGACGCCCACCATATAGCCCCGCTGTAGCCCCCCTCGGATCAGCTCGGACAGCTCACTGCGCTTCTGCTGGAGTTCAGGTTGGGAGATGGTGTGGGGAGCAACAGATGTCACGCTGGGGAATAAGCCCTCAAAGCCGCTGCTGAGCCTCAGGAGGGGAAACACGCACAGCACACACTTCGcgcagaacacacacaaactcacacacacacacacacacacacacacacacatgcaggcgCGTGCACACCAAGCCGGGATGAGGAGCGCTCAGAGCGAGCGCTGTTGACGGATggactttctctctctatctctctctttctctcaccccCTCTCACTTTCGCCCCCTCGCTCTCTGTCTCCTTCTCTCTTATGCTCTTTTTCGCACTCTTTTCTAGGAGCGTTTTTTATGTTGTAACGGAATAGTTGGAATAGTTTTGGCGCCAACATTTTGCCGCCACGtcgttggaaaaaaaaaaagcgcgaGCAGCTTGGCGAGTCGGGCTCGTGCGTCCCGGGACGCAGCGGATTAAGGAGGGACTTTGGCGAGGGTGGGTATTTGAGTGctagaggagctgcagagttcaCTCCAACGCGCTTAATCGTGGAGGGACGAAAAGCAGGGCGGTTTAGTCGGTATGCCGCCCAAGAAAAAGGGTTCGGCGGACCGTCAGGACTCAGGAGCCActgaggagaaggagaagaatgCTCAGGTCCAGTTGGACAAGGCCAAGTTCAAGCCTGTTGCTTTCGCTGTGCGCACAAACTACACCTACACTCCTGCCGATGACGACAATGTTCCAATACCTGGACATGGGGTTTCCTTTGAGGCTAAAGACTTCCTGCACGTCAAAGAGTTCAACAATGACTGGTGGATTGGGCGACCGGTGAAGGAGGGAGGGGAGGTGGGTTTCATCCCCAGTCCGGTTAACCTGGAGACCATTCTCATCAGAAGAGAGGTGCAAGCCAGGAAGGCGGCCAAAGCCCTGGCCAACAAAGCAGCAAGTGCTGCCAAAGATGATATGAACGCGAAGAAAGTTACTCCTCCGACGACAGTTCAGCAAGTAAAAAAGAAATCGGGGGAGCAACTGGCTGCATATGACGTTGTGCCTTCCATGCGCCCCGTGGTGCTGATGGGGCCTTCCCTCAAGGGCTATGAGgttacAGACATGATGCAAAAGGCTctgtttgattttttaaaacacagatttgAAGGCAGGTATGTAATCACACCAGGCGTCATTAGATTCTGCTTATGTAGCCATAAAATTGTTTct
>TU191050
AGCGGCTGACGCAGGGAAAAGTCCAACTGGAAAAATGACATTTACACCATTGCGTATCAATCCTAAACTCTGAgccagggtgtgtgtgtgtgagtgagagagagggtgagagggtGTATGTGACGGAGGTAGGTGGTAGGGGGTtagggaggggtgtgtgtgagtgtgtgtgtctgagagtgtgtgtgtgtgtgtttgtatgtgtgtgtatatattaataagTAAAGCAGCTGCAAGCAGACTCGGATCAGAAGCAGCACAGGGATGAGGTGAACACAcgatacactctctctctcacacacacacctgaagcTGCAGCCTGTGGAGTCCCCCCTGAGCTTTCGAGATCTGAAGGAGGACGTGAACGATCAGTTTATGAATGGCACAGTCAGTCAGCGGACGTCCACTCACCTGCCAGCAGAAAGCTGGAGGTATTAGAGGGATCTGTGGTCTTCTACACTGTTTTATCTGAGCCACGGGGATGACGGGACAGACACTTGCCGTCCCTCCATGTCTGATGGACCTCCCTACTGGACACGCAGTGAGCTGAAGTGACCTGCGGCTTTCCTCGGCTGTCCCCTTCATCACGACCCTCTGGATGTGCTCTTGATGTATTGCTGTGGTCTGGGACACTGGCGGAGAGTACAGTCCACCTACGGTTCGGCGGACCGTCAGGACTCAGGAGCCActgaggagaaggagaagaatgCTCAGGTCCAGTTGGACAAGGCCAAGTTCAAGCCTGTTGCTTTCGCTGTGCGCACAAACTACACCTACACTCCTGCCGATGACGACAATGTTCCAATACCTGGACATGGGGTTTCCTTTGAGGCTAAAGACTTCCTGCACGTCAAAGAGTTCAACAATGACTGGTGGATTGGGCGACCGGTGAAGGAGGGAGGGGAGGTGGGTTTCATCCCCAGTCCGGTTAACCTGGAGACCATTCTCATCAGAAGAGAGGTGCAAGCCAGGAAGGCGGCCAAAGCCCTGGCCAACAAAGCAGCAAGTGCTGCCAAAGATGATATGAACGCGAAGAAAGTTACTCCTCCGACGACAGTTCAGCAAGTAAAAAAGAAATCGGGGGAGCAACTGGCTGCATATGACGTTGTGCCTTCCATGCGCCCCGTGGTGCTGATGGGGCCTTCCCTCAAGGGCTATGAGgttacAGACATGATGCAAAAGGCTctgtttgattttttaaaacacagatttgAAGGCAGGTATGTAATCACACCAGGCGTCATTAGATTCTGCTTATGTAGCCATAAAATTGTTTct
>XM_022678037.1
gtgtgtgtgtgtgtttgtatgtgtgtgtatatattaataagTAAAGCAGCTGCAAGCAGACTCGGATCAGAAGCAGCACAGGGATGAGGTGAACACAcgatacactctctctctcacacacacacctgaagcTGCAGCCTGTGGAGTCCCCCCTGAGCTTTCGAGATCTGAAGGAGGACGTGAACGATCAGTTTATGAATGGCACAGTCAGTCAGCGGACGTCCACTCACCTGCCAGCAGAAAGCTGGAGGTATTAGAGGGATCTGTGGTCTTCTACACTGTTTTATCTGAGCCACGGGGATGACGGGACAGACACTTGCCGTCCCTCCATGTCTGATGGACCTCCCTACTGGACACGCAGTGAGCTGAAGTGACCTGCGGCTTTCCTCGGCTGTCCCCTTCATCACGACCCTCTGGATGTGCTCTTGATGTATTGCTGTGGTCTGGGACACTGGCGGAGAGTACAGTCCACCTACGGTTCGGCGGACCGTCAGGACTCAGGAGCCActgaggagaaggagaagaatgCTCAGGTCCAGTTGGACAAGGCCAAGTTCAAGCCTGTTGCTTTCGCTGTGCGCACAAACTACACCTACACTCCTGCCGATGACGACAATGTTCCAATACCTGGACATGGGGTTTCCTTTGAGGCTAAAGACTTCCTGCACGTCAAAGAGaAGTTCAACAATGACTGGTGGATTGGGCGACCGGTGAAGGAGGGAGGGGAGGTGGGTTTCATCCCCAGTCCGGTTAACCTGGAGACCATTCTCATCAGAAGAGAGGTGCAAGCCAGGAAGGCGGCCAAAGCCCTGGCCAACAAAGCAGCAAGTGCTGCCAAAGATGATATGAACGCGAAGAAAGTTACTCCTCCGACGACAGTTCAGCAAGTAAAAAAGAAATCGGGGGAGCAACTGGCTGCATATGACGTTGTGCCTTCCATGCGCCCCGTGGTGCTGATGGGGCCTTCCCTCAAGGGCTATGAGgttacAGACATGATGCAAAAGGCTctgtttgattttttaaaacacagatttgAAGGCAGGTATGTAATCACACCAGGCGTCATTAGATTCTGCTTATGTAGCCATAAAATTGTTTcttttaaacacacatataacacacatactAATGAATCCCAGATCCAAGGTGAGGTGGAGAGGATCTTTGAGCTGGCCAGAAGTCTGCAGCTGGTGGTCCTGGACGCAGACACAATAAACCACCCGCTCCAGCTCAGCAAGACATCCCTGGCCCCAATCCTTGTCTATGTCAAGATTTCATCCCCAAAGGTGCTCACCAGGTTAATAAAGACCAGGGGGAAGTCTCAGACCAAACATCTCAACGTTCAGATGGTGGCTGCGGATAAACTTGCCCAGTGTCCTAATGAAATCTTTGATGTCATCTTAGATGAGAATCAGCTTTCAGATGCCTGTGAGCATATAGCTGAATACCTAGAGGCGTACTGGAGAGCCACCCATCCTCCAGAGATGGAGCCAGCCAACCCTTTGGTTGAGAAACTAGCAGAGAACACACTTCCCACCAGCCCAACACCACCTAAGGATGAACCTAAAAGTAAGAGGACAGCGGCCACCAAGAGGAAAGGCTCCCAGGAGAACCAGCTAGAGGAAGAGCCACCCCAGGCTGAGGAGCCGAGGGAagtggaggaagaggaagaagaggcaagagaggaggaggaggaggaggaggaagaggccgTAGAGGAGGATAAGCTACTTAGAAGTGAGCCAAAGAGACCCCAACATAGTCACCATcgtcaccaccaccaccaccaccggtCTGGCATTAATCGCACCGAGCAACACAACCACCACCAGCCTGCGCACCCCCAGCCCGCGGACATCGAGCTGATACCCAAGGACTCCATGTACACCGAGCCTCGGAGCCGACGCCTGCTTATGGACGAGGACGAACTGGACCAAATCGACGTGTACCACAACAGGACTACAGCCCACAGAGATCACAACCACCAGCACCacaaccaccaccatcaccaccaccaccatcaccgcGGGACCACGGACGTTTACGACGAGCACTCCCCACACGGGCAGGACTATGAGCTGAAGCACAACGAGCGCAACAGGCAGCACAGACACCAGGCACAGATACGGTCCCACCACCACGAACGGACTCATCACAGCCCTCTGGAGCTACAGTCCCATCACGAACAGTCGCTACGCTCCCATCACGAACAGTTGCTACGCTCCCATCACGAACAGCCGCTACGCTCGCACCACGAAAAGCACTACAGCCTCCCACAGGCTGTTCACCACAACCACTATCACTACCCCAGTCGGGAGCGGGACAGGGACAGAAACAGAGACCGGGACAGGGACAGACACATGGAAGATGAGAACTGGCCCACAGATATGTACATTCATCGTTGATTGATGAGGGTTTGCACTGTGTCGGTCGATGCTGCTTTGTGAATTGTAGGTGGAATGCCAACAGTTGTACTGTCCAGGTGTTGCAACACAAGCATGCTTTTAATGTGAAGCATATAACTGCAATGTAGCTGCGAATAAAGTGTACTTAAATCGTATATTAAATGGACCATACTGGAGATTACTTGGTGAAATAAGACTTTCCAATAGTTTAA

Function

symbol description
cacnb2b Predicted to enable high voltage-gated calcium channel activity. Predicted to be involved in chemical synaptic transmission; neuromuscular junction development; and regulation of voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in several structures, including heart; integument; liver; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Brugada syndrome 4; hypertension; and hypertrophic cardiomyopathy. Orthologous to human CACNB2 (calcium voltage-gated channel auxiliary subunit beta 2).

NR:

description
PREDICTED: voltage-dependent L-type calcium channel subunit beta-3-like isoform X2

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191048 False 670 lncRNA 0.49 6 12488699 12499476
TU191049 False 1298 TUCP 0.53 8 12488699 12544939
TU191050 False 1278 TUCP 0.52 8 12488699 12572147
XM_022678037.1 True 2617 mRNA 0.52 13 12472804 12571966

Neighbor

gene id symbol gene type direction distance location
LOC103032996 NA coding downstream 351528 12056835 ~ 12121276 (-)
LOC103032062 NA coding downstream 422361 11974748 ~ 12050443 (-)
LOC103031742 NA coding downstream 504403 11945426 ~ 11968401 (-)
LOC103027519 NA coding downstream 640540 11819859 ~ 11832264 (-)
trnad-guc_16 NA coding downstream 717205 11755528 ~ 11755599 (-)
LOC103028177 LOC108437218 coding upstream 11730 12583877 ~ 12589743 (-)
stam stam,LOC107664071 coding upstream 24673 12596820 ~ 12612107 (-)
LOC103028809 colec12,LOC103028809,LOC108437226,LOC108267818,LOC107686068 coding upstream 46004 12618151 ~ 12703278 (-)
LOC103029125 yes1,LOC108437224,LOC107713975,LOC107584194,LOC107686048 coding upstream 168237 12740384 ~ 12822960 (-)
LOC103030941 lpin2,lipin2,LOC108413408,LOC107686047,LOC107584234 coding upstream 876128 13448275 ~ 13509530 (-)
G141024 NA non-coding downstream 91273 12378935 ~ 12381531 (-)
G141013 NA non-coding downstream 137576 12333455 ~ 12335228 (-)
G141000 NA non-coding downstream 205096 12267167 ~ 12267708 (-)
G140897 NA non-coding downstream 418648 12053861 ~ 12054156 (-)
LOC111194201 NA non-coding downstream 498160 11972057 ~ 11974644 (-)
G141136 NA non-coding upstream 165247 12737394 ~ 12818134 (-)
G141164 NA non-coding upstream 328095 12900242 ~ 12900443 (-)
G141171 NA non-coding upstream 363724 12935871 ~ 12936079 (-)
G141179 NA non-coding upstream 412720 12984867 ~ 12990455 (-)
G141180 NA non-coding upstream 433980 13006127 ~ 13006998 (-)
G141020 NA other downstream 57649 12348559 ~ 12415155 (-)
G140975 NA other downstream 297810 12173695 ~ 12174994 (-)
G140772 fam134b other downstream 862275 11606235 ~ 11610529 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other downstream 1957997 10511089 ~ 10514807 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other downstream 2127306 10311097 ~ 10345498 (-)
G141220 NA other upstream 743744 13315891 ~ 13316365 (-)
G141255 LOC108413406 other upstream 864484 13436631 ~ 13438896 (-)
LOC103040388 LOC108440660,LOC107686045,LOC107746915,LOC108268132,LOC107732591 other upstream 940005 13512152 ~ 13585394 (-)
tcea1 tcea1 other upstream 1283410 13855557 ~ 13864078 (-)
G141383 NA other upstream 1337037 13909184 ~ 13910602 (-)

Expression


Co-expression Network