G141188


Basic Information

Item Value
gene id G141188
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 13040790 ~ 13041271 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191148
gtggcttagtggttagcacgtttgcctcccagcactggggtcttggttTCAAGTCCcaatctgggtggagtttccatgttctccccgtgtttgcgtgggtttcctccggggactccggtttcctcccacagtccaaaaacatggagatcaggtaaattggatactctaaattgtccaGAAAAAATTGAATACACTAAATTGATccggtgtgtgtaagtgtgtggtatgtatgtaagtttgtgtgtgtgttaatgtgtgtaaatgtatgcatgactgtgcccagatatggattggcactctgtgctgggtaattgctgtagtgcccgatgcagtcctccaggtggacggtcgtttccggttgagagtgcgctgtgcgctattggctgccgtgtaatgtgcttgtgtgtaaaaacgtgtaaattgtaaagcatacttgggtttctagaaaaggctctatataagttgaacttcattcaaaCCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191148 True 482 lncRNA 0.46 1 13040790 13041271

Neighbor

gene id symbol gene type direction distance location
LOC103030385 LOC108437225 coding upstream 308422 12708110 ~ 12732368 (+)
LOC103027534 NA coding upstream 576143 12179687 ~ 12464647 (+)
LOC103028579 NA coding upstream 868324 12132187 ~ 12172466 (+)
LOC103028056 NA coding upstream 1113042 11866450 ~ 11927748 (+)
e2f5 LOC108437220,LOC108268108 coding upstream 1244946 11784077 ~ 11795844 (+)
LOC103030306 NA coding downstream 352106 13393377 ~ 13437203 (+)
rgs20 rgs20,LOC108440656 coding downstream 755123 13796394 ~ 13846951 (+)
LOC103040707 NA coding downstream 825016 13866287 ~ 13882845 (+)
gpr141 NA coding downstream 859637 13900908 ~ 13918612 (+)
LOC103035806 ctnnd2,ctnnd2b,LOC107746909 coding downstream 897014 13938285 ~ 14142611 (+)
G141185 NA non-coding upstream 7197 13030772 ~ 13033593 (+)
G141178 NA non-coding upstream 50356 12984867 ~ 12990434 (+)
G141099 NA non-coding upstream 224554 12814867 ~ 12816236 (+)
G141087 NA non-coding upstream 255053 12738242 ~ 12785737 (+)
G141075 NA non-coding upstream 428700 12611298 ~ 12612090 (+)
G141189 NA non-coding downstream 57815 13099086 ~ 13115018 (+)
G141195 NA non-coding downstream 95495 13136766 ~ 13212354 (+)
G141200 NA non-coding downstream 163623 13204894 ~ 13205263 (+)
G141221 NA non-coding downstream 292656 13333927 ~ 13334392 (+)
G141224 NA non-coding downstream 334484 13375755 ~ 13441640 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 180463 12842798 ~ 12860327 (+)
G141086 NA other upstream 297337 12741473 ~ 12743453 (+)
G140930 NA other upstream 659236 12378996 ~ 12381554 (+)
G140931 NA other upstream 800165 12237988 ~ 12240625 (+)
LOC111194237 NA other upstream 1562050 11455485 ~ 11478740 (+)
G141361 tcea1 other downstream 814332 13855603 ~ 13858605 (+)
G141410 NA other downstream 1139394 14180665 ~ 14200998 (+)
G141495 NA other downstream 1486869 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 1737910 14779181 ~ 14784812 (+)
G141740 LOC108440267 other downstream 2013386 15054657 ~ 15056973 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034783 trim66 coding NC_007118.7 CM002891.2 28423996 ~ 28463403 (-)
eurasian perch (Perca fluviatilis) G209589 NA non-coding NC_053132.1 CM020929.1 3617626 ~ 3621406 (-)
mexican tetra (Astyanax mexicanus) G209303 NA unknown NC_035920.1 CM008323.1 31517433 ~ 31517892 (-)