G41170


Basic Information

Item Value
gene id G41170
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 1692065 ~ 1695821 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU46746
ACATATGTAACATTGCTTGAAATGACAACAATTCAGAACTGTAGTAGGATGTTAAAATAAAGCTGTTTAAATTTTATTGGGATACAAAATTTGAATTAAAACGCATTGTAAACCAAAATGTAATTATATATGTTATATAAATTACAAACTGATAAATATTTGATGTAAAATTGGCATGGGGAAACGACAGGCAAAACAGACCTTTGAGTATTTAAAGGATCCCACAGGGTATCTTTGGTTTAGTAAAACAAAAATGCAGATAAGACAAAGTTATTTTAAAAACTGGAAAAAAAAAAAAAATAAAATGAGTTATTCGAGAAGCTGAGGCAAGACATTGACATTTTGGAAAAGTCTGTAGAAGTGCAAATGATTTCCTCTGTTTTTAGAAGGAATGAGGAACGTCATTGTCACGTCAGCCAAACAAAGTCACGGTCAGTGATGTGGATACATTTGTATTTCTTCTTGCTTCCACAAAACTCTCAGCTGAATTATTAAATGCTTTAGAAAGTATTGCTTTCACATGACTGTGGGATTTCTCATACATGAATGGCCAAAAGCACACATACAGATTGAGCAACACATGTTATGACTTAAACATCATCGTATGATTCATGCACAATGAAGTGTTTGTCCTTTTGCTGTGAATGTTTTAAGGAGACTCAAGCACTCTTCAGAAAGCAGCATGTGTCCTTAATGAGCCACAATATTACCTTCTTGACTTTCAGCTAACATTTCATCTAATGCCAATGGGCTAAACATAACATTTTAAAAATGGAAACATCATTAAAAAACATCATTTTTATAGCTGAAATGAAAATACCAACAGTTGTATTGTATACTTTTGCCCTTAGCCTTTAAATTTGACATACAACAATCTTAAATTTAAGCTCCATTATAGGAAGGCACTGTAAAGTTATACATTCATCTGAACCTAACACATCATTTGAGTTTGTTGATGAATCCCTGAGCCTTGAAATCTACTGAACTGAATCTTTGGCCAACTGAAAGCTTCCTTCCTTTACATTAATGGCTCATTTAGGATTGTGCCATTTAAAACGACACAAGCTGTTCCCAAATCAGTCACTAAGTGAAGAAAGTGCCTTGTTTTCTAATAAGGTTCTGAAGCCCCACCCTGGAGCGCTGAGGAAGAAAAGAATGAAGAGTTGAATGTGACGCATAGCATGCTGGGACCTCTGTTTCCTGAAGGGTCTGCCAGACAGTTTCCACACCACAAGGAAGTAAAGCCGTCAAGCTGCCAGGCAACAACCCCCTCATCGCACATACAAGATCAGGTATGTCTAAGGAGCCGCTTCACACAGAACGCATTTGAACAGTAGGGCTCTGGAAGTAAACATCCCATTGATTTTCTCCACAGGGGAATTGATTTTGAATGATAACTTATAAACCATTAAAGGCAGACCAACTGTGAGCTGCGAGGTGTTAATCAAGGGTATATGCTTTTGTTGAAGCCAACAAAACTTTTTAAATAATCGTGTTCAACAGTGGAATTACATTACCCTTGATTCTGCAAAGAAATCTCCACCAATCAGAGAATCTCGACAAGTAAATCAAGTGGTGTAGGTATGACGTAAGGATCTGGAAGAGAAATTCGCCGCTGGTTCCTTCGAGATTTTCCTATAATGGGGTTTTTCAATTCATGAGTAAAATAAAGCCTGTGGTAAACATAACTTGACGATATTTTGACATTTTTTTCTACAATGTAAACTGCACATACTCACATCCCAAACTTTCTTATCTAGTTATTTATTAAAAATGTACGTTTTCAAAAATGAGCACAACTTCTTAAAGTTTGCGTTTTCGGTATGGGCATGTGTAATTTGTGTTGTAGAAGAAAACGTCAAAGTATTGTCAAATTATGTTTACCTTACTCATAAATTGATTATAAAACCCCATAGGAAAATCTCGAGGGAACCAGGGGGCGGGGCTTTGACATCATACCTACACCACTCCCATGAAGAACTGCGAATGACTTGACACACTTCCTTATACGCTCTAAAAGTACTTCAATATTTGTACATATATGCATATTTTTCAATAAATGCAAAATATGTTGTTTCTATATACACAATCAACATCTTTATATTTATCTGACAGTTTGAATTTGATTACATCATTCGCAATGCTTCATGGGATTGTAGTTCTTTCCCTCATTAAAGCCATGAATTGTCTTGATTTTCAAATACTTTTTTGCTTCAAATTCAAATTTGTAATGTTTCACAACATTTACCTTGTTGCTAGTTGGTTTGGTTCATGGCTTATTATTTTTTAATGAATACTTTTTTAAAATCTATATGGGAAAAATACTTGGGCAGACACTGGTACACTATAGTCTTTGCTGTTACAGAATCTCACGTGTTTTACAGATGTCATGTCAAAGGAAGTTCAACTTTTAAAAGCGCAACCCTGCTTTCTTTTACATTCAGCTATGCCTCGCGTTTTTAAAAGCAAGAACGCATTCTGTGTGAACGGCTCATACAATATTATAGATAATGTCACTAATGATACAAAAGGCCTGTCCTCAAGGACACCCCAATCATAGAACAAATGCCTTGGGCATAAAAACTATAATTAGTACTATATATATATTCTCAGATTGTGTTTTTGTTAATAATAAAAGACAAAAAACTTCATTAACCAACATTATTAAGTCTCCAAACATTAAAAAGGAACTAAAACCCATTTACACTGAAATATATTTAAGTGTTTAGTTCCTGTATATTGTTTTATGTATTCCTGAGATACCATGAGATGGTATCAAACTGTTTAGTGGTCTTATGAACCCCCACCCCTTCAAAAAAAAAAAAAAAAAAAAAAAAACTTCTTCAGTAGGGATCTCAATACAGTGTAAAACTTGATACTTAAGTTGATCTTGTATTTCTCTAATTTCACAGATTAAGGCTGTGTTTCTTGGTCACCGTTCACCGAAAACCTATTACTCCAAACATTCAATAACATTCCCACAATTTCTATGCATTCCTGTGTGTAATTCATTTAAAATACCTCTATGCTCTCTATATTTTCAGAGGAGTATACAGGGCTTCTTGGCAGCCACAGGCTGAGGACTGAGGAAGGCACGCACTGCGTCTGCAAACACGTCCTTGATGCCGTCCTGGCTGAGTGCCGAGCACTCCATGTACTTGACGGCGTGGATTTGGCGAGCCAGAGCGTGACCCTGCTGTTGTGAGATGGGCGCCTGGTTCTGCTCCTTTAGCTTCTTCAGCACATCCGCGTCATTGCGAAGATCGCTCTTGGTCCCCACCAGCAGGATGGGCACGCTGGGACAGTGGTGCGTCACCTCTGGATGCCACTTGTGCTTGACGTTCTCATAGGACGGGGGGCTGGAGATGGAGAAGCAGATGATGAAGACGTTGGTCTGAGGGTAGGACAGCGTGCGAAGGCGATCATACTCCTCCTGGCCTGCTGTGTCCCACAGATTGAGGCTGACAGTGCGGTTGTCCACGCTGACTTGGGAGCTATAGTTGTCGAACACAGTGGGAATGTACTCTTTGGGGAACGCGCCAGTCGTGTACGAGATGAGCAGGCAGGTTTTTCCCACTGCTCCATCCCCCACCACCACACACTTGATGCTCTGCATGATAGAAAGGTGACCACTCGACTTCAACAGTCTGCAGAAAAAGACACATGCTCTCTGTTAGAGGACAACATGACACACTGTTTAGATGGCCAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU46746 True 3710 TUCP 0.38 2 1692065 1695821

Neighbor

gene id symbol gene type direction distance location
CI01000006_01680551_01688030 PGAP2 coding upstream 3410 1680551 ~ 1688655 (+)
CI01000006_01666458_01679245 NCBP3 coding upstream 12148 1666241 ~ 1679917 (+)
CI01000006_01649163_01661667 NA coding upstream 30305 1649163 ~ 1661760 (+)
CI01000006_01570716_01587422 NA coding upstream 104284 1570716 ~ 1587781 (+)
CI01000006_01554462_01567732 TPST1L, TPST1 coding upstream 124293 1554462 ~ 1567772 (+)
CI01000006_01712959_01738587 STIM1B, STIM1 coding downstream 17138 1712959 ~ 1739325 (+)
CI01000006_01778632_01788481 RIR1, RRM1 coding downstream 82811 1778632 ~ 1788481 (+)
CI01000006_01814388_01822488 TNFSF10L3 coding downstream 118567 1814388 ~ 1822871 (+)
CI01000006_01842317_01859671 NA coding downstream 146496 1842317 ~ 1861834 (+)
CI01000006_01890066_01892979 RAB39BB, RAB39B, RAB39A, RAB39BA coding downstream 193892 1889713 ~ 1893123 (+)
G41165 NA non-coding upstream 191901 1499912 ~ 1500164 (+)
G41128 NA non-coding upstream 193032 1420533 ~ 1499033 (+)
G41134 NA non-coding upstream 232403 1451243 ~ 1459662 (+)
G41087 NA non-coding upstream 306552 1298166 ~ 1385513 (+)
G41081 NA non-coding upstream 400560 1290577 ~ 1291505 (+)
G41225 NA non-coding downstream 142321 1838142 ~ 1839882 (+)
G41262 NA non-coding downstream 220813 1916634 ~ 1916911 (+)
G41263 NA non-coding downstream 222584 1918405 ~ 1918737 (+)
G41242 NA non-coding downstream 223111 1918932 ~ 1923944 (+)
G40768 NA other upstream 1199039 488407 ~ 493026 (+)
G40767 NA other upstream 1208730 360009 ~ 484185 (+)
G40772 NA other upstream 1212871 475465 ~ 479194 (+)
G41424 NA other downstream 949841 2645662 ~ 2660570 (+)
G41591 NA other downstream 1140346 2836167 ~ 2839421 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 2033409 3734554 ~ 3736035 (+)
G41996 NA other downstream 3421385 5117206 ~ 5124149 (+)
G43896 NA other downstream 4074268 5770089 ~ 5771775 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location