G141255 (LOC108413406)


Basic Information

Item Value
gene id G141255
gene name LOC108413406
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 13436631 ~ 13438896 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191226
ttttattgacaTAAACGTAAACTCAtatgaagtaaataaacaatttatacaataataaaagaaacatgTAGATTACTACTAAATATCTTACAGTGCTTATTGTAAAACAAGCGTGTGGTGTTTGCTAGGGCTGCACAGTTTGGCTGTATGGATGTAGCACCAAATTTCCTTCAATGACTCTGATATAAatcatactagtgcatctttaaaagttactttatttcagtaatgcaGTTCCAAATGtataactcatatattatatagatgttttacacacagagtgatctatttcaggcatttatttattttattgttgataattatagCTAACAGCCAGAcagttggtccactgtgttaaatcatggaaaatcttacagcacttcatgacaacttttatggagctttcattttccagcaggacttggcacactgcccacactgctaaaagtatgaattgttcttatataatattacaattttttgagacactgatttttgggttttcattgtctgtaagccataatcatcatcaacaatacaagaaataaactctatttgaaataaataaaaactgaaataaagtaacttttcgaTTATATTCAAATGTTTTGAGTTGCACTCGTATACACTGTGATTGTTGTTTGCTTtagcatatcgtcactgtcttatgaaaaacacttatctccatttttgtcgatttttagtttactacataatttgaaaagACAAACTGTcacttacactgtgccaaaatttcttgatggacaaaccaatagaaactcttcacaatgaccttaaataaactattttttacattaacttcccttgaaagtttacaagggtTCTCTCCTGTATAGTTTtcgttttggagataagtgttttttattggacagtgacgctATATTAGAAATAGTAAAAAGTATCAGAGGATTTTTGGTGGTGGTGAATAAAGACTTTCAGGCATTCAGCATTATTACGATCTGTGATGTGATGCTtccaaaatcaataaaacaccCACATCATCTCATCTTCTTATCTGACTGAATGCTTGAGATTCAGTCCGGGTGCTTGGAGAACAACACTCGCAATCAAGTACTCATTTGCATATCGCTACCTTGTGTGATATCAGTACAGCAAAGCCCAATACTGCTTTAACAACTAACAGGCGTTATAAAATGAAGCCCTAGTGTCACTGTGGCATTCTCAAATATTATAGTCTGGAGACAAATCAAAttctctataataataataataataatcaaagacTCTATAATCAtcaatgcaagatcttggtgcaccggattataaggcacactatcaatgaacgacaattttttggtgtattttcatacataaggcgcaccagattataaaacatattaagcgatgctagtaaggatgcctacattgaagtgagcaagggtgctgccgtgtttcccttttaatgggttccagtccaatatactcacctctgaacggcgcaacagctagcactgcggttagcagctaatgctaatgttgcacccagccttagtgctggagaaacttcactgaacaTCAGTAGAGTTCCTTTACtgttccttaatacctgactggtagaactcatacataaggagcaccagattataaggcacactgctgattttttgggaaaatttaaggattttgggtgcgccttatagtccacatatatatatGCAACATATATTGACTAACATTTGAATAAAGGAAAAGTCAGAATTAGATTTGTCACCAATCTAGAAGTTTGAGAAATGCCTGCGCGCTGTTCTTCTTGCAGTGTACCCCGACTTGGAACAGGCTGCCGAGAGTTAGTGTTAACAGTCTTTCAGCATCCACCTCTCtttctatacctctctctctctctctctctctctctctctttttctctctctggctgGAGGCTATCTCCGGGCCTGAGGCGAATAGAGGAAGACCGCGCTGAAGGTAGAGAGGATCTCCTTGGCGTCGGAGATGGCCAGCGCTCCTGCCGTCCGCACCAGCGACACACGGTCGGCCGCCCGCAGCGGGAGGATGAGGCTGAAGGAGGCGGAGCCTCCGCACGTACACGGCTGCGGAGCGAGGTGTCCGCTCGCCCCGGAGTAACCCGCGGTGTCCAGCTTCTGCACGCTGCGGTTGGACACGGAGAGCACGGCCTCCACTCGCTCACGCCGCGCTGCCATCAGGACCGCTGTGACCAGATAGCGTCCGTCTACAGGCGC

Function

NR:

description
PREDICTED: EMILIN-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191226 True 2240 TUCP 0.40 2 13436631 13438896

Neighbor

gene id symbol gene type direction distance location
LOC103029125 yes1,LOC108437224,LOC107713975,LOC107584194,LOC107686048 coding downstream 613671 12740384 ~ 12822960 (-)
LOC103028809 colec12,LOC103028809,LOC108437226,LOC108267818,LOC107686068 coding downstream 733353 12618151 ~ 12703278 (-)
stam stam,LOC107664071 coding downstream 824524 12596820 ~ 12612107 (-)
LOC103028177 LOC108437218 coding downstream 846888 12583877 ~ 12589743 (-)
LOC103032996 NA coding downstream 1315355 12056835 ~ 12121276 (-)
LOC103030941 lpin2,lipin2,LOC108413408,LOC107686047,LOC107584234 coding upstream 9379 13448275 ~ 13509530 (-)
bag1 bag1,LOC107746903,LOC107664079 coding upstream 149620 13588516 ~ 13591700 (-)
LOC103031885 chmp5,LOC108440659,LOC107732555,LOC107664100,LOC107586329,LOC107558945,LOC107686086 coding upstream 154861 13593757 ~ 13599834 (-)
LOC103032206 oprk1,LOC108440658,LOC107664042,LOC107732559 coding upstream 187936 13626832 ~ 13635497 (-)
atp6v1h atp6v1h,LOC107664082,LOC107686042 coding upstream 250327 13689223 ~ 13794272 (-)
G141245 NA non-coding downstream 64334 13368621 ~ 13372297 (-)
G141218 NA non-coding downstream 121601 13314691 ~ 13315030 (-)
G141217 NA non-coding downstream 148258 13288126 ~ 13288373 (-)
G141180 NA non-coding downstream 429633 13006127 ~ 13006998 (-)
G141179 NA non-coding downstream 446176 12984867 ~ 12990455 (-)
G141247 NA non-coding upstream 764 13439660 ~ 13480474 (-)
G141257 NA non-coding upstream 71643 13510539 ~ 13510781 (-)
G141258 NA non-coding upstream 72214 13511110 ~ 13511318 (-)
G141336 NA non-coding upstream 315014 13753910 ~ 13754761 (-)
G141337 NA non-coding upstream 323841 13762737 ~ 13763137 (-)
G141220 NA other downstream 120266 13315891 ~ 13316365 (-)
LOC103027860 cacnb2b,LOC108437228,LOC107664070,LOC107713974,LOC107751551,LOC107585874 other downstream 864484 12472804 ~ 12572147 (-)
G141020 NA other downstream 1021476 12348559 ~ 12415155 (-)
G140975 NA other downstream 1261637 12173695 ~ 12174994 (-)
G140772 fam134b other downstream 1826102 11606235 ~ 11610529 (-)
LOC103040388 LOC108440660,LOC107686045,LOC107746915,LOC108268132,LOC107732591 other upstream 73256 13512152 ~ 13585394 (-)
tcea1 tcea1 other upstream 416661 13855557 ~ 13864078 (-)
G141383 NA other upstream 470288 13909184 ~ 13910602 (-)
fam173b fam173b,LOC108440663,LOC106941709,LOC107578923,LOC107550697,LOC107746922,LOC107664046 other upstream 771549 14210445 ~ 14214316 (-)
G141581 puf60,LOC108268151,LOC107718021,LOC107599879,LOC107558234,LOC107701012,LOC107657443 other upstream 822378 14261274 ~ 14269897 (-)

Expression


Co-expression Network