G141323 (atp6v1h)


Basic Information

Item Value
gene id G141323
gene name atp6v1h
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 13758683 ~ 13791358 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191313
GTACCATGTAgcttCTGGGAGCTAAGCTGAGTCTTGATCCAGTTAAAGTAGTAGTTCAGATCACTCCCCTCCATCAGGTCCCGCCCCCAGGCAGCGAGCTTGGCAATGATCCTTGCAGCCATATGGACGGTGAAGAGGTCCTGGCGGTTCAGCATTGGGAGAAAATAGGACCAGGCTGTATTCTTGGTCTTCTTGGCATAATCGAAGAAAATGTTGACCCTCTGATGATTTTCctGTAGAGTGTCATCAATCAGGGTCAAGATGTATTGAACCGTTTGCTCCTTTGATATATGGGCCATGAGGTTGAGGAAGGtctttgcacaCTGATGTCCTTCATTGGTCAGAATGGCCTGCTTATCCTCAGAGTGGGCAACTTCAAACTTCTTGATAAACTCACAGTCTTCTCCAGAGATCATCTGACCCTGCAAATAGGACTGCCAGTTGACCTTGTTGGCGCGGACCTCAGCAGCCTTAGCTGCGATGATATTGGTCGGGACGGCAGCGTCCACTGCTCCTCGGATGTCCATGTTTGAATAGGTGTTGTCTCAATGTTCAACCAAGAAAAT

Function

symbol description
atp6v1h Predicted to enable proton-transporting ATPase activity, rotational mechanism. Involved in eye pigmentation and positive regulation of neural retina development. Acts upstream of or within animal organ development and pigmentation. Predicted to be part of vacuolar proton-transporting V-type ATPase, V1 domain. Is expressed in several structures, including digestive system; gonad; integument; nervous system; and trigeminal placode. Used to study osteoporosis. Orthologous to human ATP6V1H (ATPase H+ transporting V1 subunit H).

NR:

description
V-type proton ATPase subunit H isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191313 True 566 lncRNA 0.49 6 13758683 13791358

Neighbor

gene id symbol gene type direction distance location
LOC103030306 NA coding upstream 321480 13393377 ~ 13437203 (+)
LOC103030385 LOC108437225 coding upstream 1026315 12708110 ~ 12732368 (+)
LOC103027534 NA coding upstream 1294036 12179687 ~ 12464647 (+)
LOC103028579 NA coding upstream 1586217 12132187 ~ 12172466 (+)
LOC103028056 NA coding upstream 1830935 11866450 ~ 11927748 (+)
rgs20 rgs20,LOC108440656 coding downstream 5036 13796394 ~ 13846951 (+)
LOC103040707 NA coding downstream 74929 13866287 ~ 13882845 (+)
gpr141 NA coding downstream 109550 13900908 ~ 13918612 (+)
LOC103035806 ctnnd2,ctnnd2b,LOC107746909 coding downstream 146927 13938285 ~ 14142611 (+)
LOC111194316 NA coding downstream 424752 14216110 ~ 14219347 (+)
G141311 NA non-coding upstream 110611 13647861 ~ 13648072 (+)
G141292 NA non-coding upstream 170224 13588090 ~ 13588459 (+)
G141291 NA non-coding upstream 170858 13587352 ~ 13587825 (+)
G141285 NA non-coding upstream 172250 13585828 ~ 13586433 (+)
G141275 NA non-coding upstream 211047 13546394 ~ 13547636 (+)
G141324 NA non-coding downstream 1658 13793016 ~ 13849982 (+)
G141329 NA non-coding downstream 35345 13826703 ~ 13831030 (+)
G141405 NA non-coding downstream 377356 14168714 ~ 14170792 (+)
G141406 march6,LOC107664076 non-coding downstream 380868 14172226 ~ 14173432 (+)
LOC111194315 NA non-coding downstream 390686 14182044 ~ 14198647 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 898356 12842798 ~ 12860327 (+)
G141086 NA other upstream 1015230 12741473 ~ 12743453 (+)
G140930 NA other upstream 1377129 12378996 ~ 12381554 (+)
G140931 NA other upstream 1518058 12237988 ~ 12240625 (+)
LOC111194237 NA other upstream 2279943 11455485 ~ 11478740 (+)
G141361 tcea1 other downstream 64245 13855603 ~ 13858605 (+)
G141410 NA other downstream 389307 14180665 ~ 14200998 (+)
G141495 NA other downstream 736782 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 987823 14779181 ~ 14784812 (+)
G141740 LOC108440267 other downstream 1263299 15054657 ~ 15056973 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_11091985_11100992 ATP6V1H coding CI01000004 null 11091680 ~ 11101817 (+)