G141324


Basic Information

Item Value
gene id G141324
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 13793016 ~ 13849982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191316
agagcatttatttgcagaaaatgagaaatggctgaaacaacaaaaaagatgcagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttttaggaagttcagaaattaatatttggtggaataaccgtggttttaatcacagttttcatgcatcctggcatgttctcctccaccagtctttcacactgcttttggataactttatgccactcttggtgcaaaaattcaagcagttcagcttgatttgatggcttgtgatcatccatcttcccctagattatattccagaaactcatcattttaggtgaactctcttttttccagagctgtatatgaataCACTAGATACATTTGTAAATAATGATCAAATAAAGCTGACTGCACTTCAGTAGTTATACCCATTGTTCCAATTCAGATCCACTGGAGTACCTAAAAAGGTTTACACtttgatttaattattaattactaaaatatcCAACCTGCTTTAATCATAATGTAAATTATGTCTTGAAAGGAACAAAACCCTtttgaaatgtattaaaatgtgttgaTCTACAGTGTGAAATATGGTTTAGATTTAGATCATTGTCTCTCAGTGTTAGTCCTAGAGAACCCCTGTACTGCACATTTTGAGCGTTTTGCTGCTTTAGCACACCTGATTGGTCACCCTGACCCATCACCCATTAgtcctttagttttttttccatagttttcccactgtgtttgtttgtttttatgaaaTGTTCTTTGTATTAATCatcctttagaaaaaaaaaaaaatttgtttttGCATTCCACCGTCCGTCCGATGAGTTTTGTTTTCCAGTCAACTCATCCTATCAGGacgtatttttatttttgcatttttgatgATGTTACCACGCACCAGCAGGAGGGGAAAATCAGTAATCTTTCGTAAACCTCTCTAGTAACCTGCTTCATATCCCTTTTCCACCACCTTTATTCTATGATATGGAGGGAAAATGCGCTGTAATTATGATTCAGGTTGAATGGGTGTGTTagatcaggaaaaaaaaacggcTGAAATTTGTCACAAAGCTGCTGCGATTGGAAAACGACTGTTTTGGACCGTCTCCTGAATTtagatgaaataaaataggagtagatattttaaggttttatattttttgcttttaaaatagtagtagtagtattattaatagtagtaggtGACGCCAAAGTAGCCAATCCAGATAAACTGTGTTCTGACTAGTTTACTCTCCAAAACCACTGACTAGAATTGGAGTTGCCaagtctttttttaatcttttggtTTCTGTGAATTACTTTGTTGCCTGACTTTCATGTCGCTCAAAGACAAGATCCTCACTCACTCGGGGAAGTGCCTTGACATTCAATTTTGTGACATCTCTTTTATGGCAATAGTTGAATCAAACTCTTGCCGCAGAAATAGACTCTGGGCCTTTGATCAATTTATAAGGTGATTTGTCCTGAAGTGACTTCGGAACTAAAACTTGCACTTCATTTgtcattctgttttatttgacTGATTTTAAAGAGCATATGATCTGTAGTTTATGTTGTTGTTAATCCCCATCACTGAAATCACAGCATATCTTTGGGTTTGAATTTAGGACAATTCATAAAGGCAGGTTGATCTGAGTCCAGGTGTGCATCTGCCAATACGTATTACACGGTGGTACTTCTACTTGTCTTAGAGTAACTTACTCAATATGTGCAATTTGAGCTGATGGATTCACCACATAGATCAACCTCAAATACAATCTAAGCCAATGGTTTGGAGTCGATACTGCCTAtaaatgttttcctttttccctttcttttttttttgttgtcgtTCTGTCGAGTACACAAAGAAGTGTTATTTTACGATCCGTTtacgagaaaaagagagtacgtttttaaatgaataatatgtgaatgtttacagtaaagtaatttttttctgttttattcaacggagaaaaaataataataatgatttgtgGGCATTTGGAAtctttaagataaaataaag

Function

GO:

id name namespace
GO:0007610 behavior biological_process
GO:0030537 larval behavior biological_process
GO:0008345 larval locomotory behavior biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191316 True 2037 lncRNA 0.35 2 13793016 13849982

Neighbor

gene id symbol gene type direction distance location
LOC103030306 NA coding upstream 355813 13393377 ~ 13437203 (+)
LOC103030385 LOC108437225 coding upstream 1060648 12708110 ~ 12732368 (+)
LOC103027534 NA coding upstream 1328369 12179687 ~ 12464647 (+)
LOC103028579 NA coding upstream 1620550 12132187 ~ 12172466 (+)
LOC103028056 NA coding upstream 1865268 11866450 ~ 11927748 (+)
LOC103040707 NA coding downstream 16305 13866287 ~ 13882845 (+)
gpr141 NA coding downstream 50926 13900908 ~ 13918612 (+)
LOC103035806 ctnnd2,ctnnd2b,LOC107746909 coding downstream 88303 13938285 ~ 14142611 (+)
LOC111194316 NA coding downstream 366128 14216110 ~ 14219347 (+)
LOC103037989 puf60,LOC108268151,LOC107598708,LOC107742128,LOC107659444,LOC105889354 coding downstream 406890 14256872 ~ 14269906 (+)
G141323 atp6v1h non-coding upstream 1658 13758683 ~ 13791358 (+)
G141311 NA non-coding upstream 144944 13647861 ~ 13648072 (+)
G141292 NA non-coding upstream 204557 13588090 ~ 13588459 (+)
G141291 NA non-coding upstream 205191 13587352 ~ 13587825 (+)
G141285 NA non-coding upstream 206583 13585828 ~ 13586433 (+)
G141405 NA non-coding downstream 318732 14168714 ~ 14170792 (+)
G141406 march6,LOC107664076 non-coding downstream 322244 14172226 ~ 14173432 (+)
LOC111194315 NA non-coding downstream 332062 14182044 ~ 14198647 (+)
G141413 NA non-coding downstream 335225 14185207 ~ 14191053 (+)
G141415 march6,LOC107686038,LOC107746911,LOC105900596 non-coding downstream 353007 14202989 ~ 14208816 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 932689 12842798 ~ 12860327 (+)
G141086 NA other upstream 1049563 12741473 ~ 12743453 (+)
G140930 NA other upstream 1411462 12378996 ~ 12381554 (+)
G140931 NA other upstream 1552391 12237988 ~ 12240625 (+)
LOC111194237 NA other upstream 2314276 11455485 ~ 11478740 (+)
G141361 tcea1 other downstream 5621 13855603 ~ 13858605 (+)
G141410 NA other downstream 330683 14180665 ~ 14200998 (+)
G141495 NA other downstream 678158 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 929199 14779181 ~ 14784812 (+)
G141740 LOC108440267 other downstream 1204675 15054657 ~ 15056973 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G13233 NA non-coding NC_053113.1 CM020910.1 760079 ~ 760338 (-)
tiger barb (Puntius tetrazona) G11894 NA non-coding NC_056700.1 CM032069.1 14369688 ~ 14371834 (+)