G141405


Basic Information

Item Value
gene id G141405
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14168714 ~ 14170792 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191428
aataaaattctccaacaaacaaacaaaaaaaaaatgtacttgtcTGCCAGTATAAGGATGTAATTACAGCCACTGCCTCCAAGCTGGaggtttttaaaacattcagaATACTGAATAACTTCTCATACGAACATGCTGTGGAAAGGACAAGGCAGAGTTAACCAGACGTGTGAGTGTTTAGTGCTGTTACCCAGCATGCCGCCTGCGCACTGTCGGCTCGCTTTGAAAAGGAACCTCCCAGAGAAGCTCAGGAAGCGACAAACAGGACATGAGACTGACGGCAGACCACACAGGATcgcagaaaagaaaaaaaatgctgtcaCTAGATGCAcatataaaaatagaaacatttgcctttttttaaggAGCCCAAACAATATTAAGAAGCATACAGTATCCAGGGTTGGTGTCGTGAGATACTGCAAGGTCACTTAAGAGATTCTCAGCACTGAAGGACTATCTCTAAAGCGTTCAGTCAGTCCAAGGGGGAAATCTGGAAGTTGTGAGGGAGACCCGGACTATttgaaatggagaaaaaaaaagaaaaaattgctACAAAAACATGGAGTACGGTAAAGTACTGTAAAGTTTACATCATATGTACAAACTCTGAGGATTTCCTCCTGGACTgtagacacacactcactcactcgcacacaaaaaaaaagattatttactTCCGTAAAATTCGTATTCTAAATCATTCACTCGCCTTGAGACAAAAAACTTAAGGTGAAGTTACATTAACACTGCATCCAAAATAAATTTGGTCTAAAGGGATGTTTCCCCAAACTATTGCTGTTTTAAGACCATTCagaatgctttttatttttttaagcacatCCCCATGTATGTGCAACAGTAATGTCAGTAAGGTGATGAAGTGAAAAATGAGTTTTCTTGGGCCATGCTGAGTacaagacagacacacagaacaGTCAACATCTTACAACTTAGACAGCAAGCTAATTATGCTAGCCTAGCCACTGAAGCGACAAGCACTCTAGGGACAGTCTCTTTGATTTATTGGAAAAGGACAAACGCGTTCTCGGAGCCGAACAAAAAGCTAGGGGCAGGAGTAAGCTTGGTAGCTCACTGTGAGCCATAAACACTACCATCCAACTTTAGCTCAAGCTGCTTAATGCTGCCGCCTTGGTGCTCGTATACTACATGCTTCAGGAGAATTCACAAAACCAAGAATGAACAATCAATCCCCAACCCCCTCCATTTCCCACGTAAAAAAATGCCACAGCTCAGAAGTGAGCCGGACTGGTTTGTTTCTACAGAGGTGCGCACCTCAAATCCACTTCCAGCCACTTCTGCTACACTGGTTAAGATTAGGGCAGTTATTGACTGTTGACTGTGGTTTCAGACAGCTTCCACTCAAGTCTTGAGTCCTAAGAACGTCGATAACATACCCCACAGAaatcaaaatgaataaataatagtcTATTACTATTCCAGCCGAGTCCCGAGACGCTCGTGTTTGAGAGAACTCTCTGGACCCCCAAACTCCTACAGGCATCTCCCCATAAGAGAGGAGAGAGCCAGCACTGGCATCGTTTCTGACCAAGCAACAGGATTTCACAAAATAAAGTGacaactaatttaataaattaatatacacacatttttcttttttttccagagAAGTTGGTTGGCTTGAAAAAattgtctctttgtctctctccctctctctctcttttttttgtagattattGAACGTTTTATTGTTCTCGAGTCATGGCCAGGAGTCATTGAGAGTTCTTGAGTGTTGAAGGACATGAGAAATGATGGACACCCACCCAtccacacattcatacacacacacacacacacacacacaaacatgtttCCCATCTTTACTCCTGCGCTGAGCTGCTGTGTGTGGTTGTGCTGGTTTTACCAGCTTTCCGTTCATAGTTCACAAGTCTCTGTCCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191428 True 1942 lncRNA 0.42 3 14168714 14170792

Neighbor

gene id symbol gene type direction distance location
LOC103035806 ctnnd2,ctnnd2b,LOC107746909 coding upstream 26103 13938285 ~ 14142611 (+)
gpr141 NA coding upstream 250102 13900908 ~ 13918612 (+)
LOC103040707 NA coding upstream 285869 13866287 ~ 13882845 (+)
rgs20 rgs20,LOC108440656 coding upstream 321763 13796394 ~ 13846951 (+)
LOC103030306 NA coding upstream 731511 13393377 ~ 13437203 (+)
LOC111194316 NA coding downstream 45318 14216110 ~ 14219347 (+)
LOC103037989 puf60,LOC108268151,LOC107598708,LOC107742128,LOC107659444,LOC105889354 coding downstream 86080 14256872 ~ 14269906 (+)
scrib scrib coding downstream 102037 14272829 ~ 14408400 (+)
LOC103039154 LOC103039154,LOC108440646,LOC108268154 coding downstream 281548 14452340 ~ 14458287 (+)
LOC103039460 LOC108268156 coding downstream 291198 14461990 ~ 14472520 (+)
G141324 NA non-coding upstream 318732 13793016 ~ 13849982 (+)
G141329 NA non-coding upstream 337684 13826703 ~ 13831030 (+)
G141323 atp6v1h non-coding upstream 377356 13758683 ~ 13791358 (+)
G141311 NA non-coding upstream 520642 13647861 ~ 13648072 (+)
G141292 NA non-coding upstream 580255 13588090 ~ 13588459 (+)
G141406 march6,LOC107664076 non-coding downstream 1434 14172226 ~ 14173432 (+)
LOC111194315 NA non-coding downstream 11252 14182044 ~ 14198647 (+)
G141413 NA non-coding downstream 14415 14185207 ~ 14191053 (+)
G141415 march6,LOC107686038,LOC107746911,LOC105900596 non-coding downstream 32197 14202989 ~ 14208816 (+)
G141459 fam173b,LOC108440663,LOC106941709,LOC107578923 non-coding downstream 39668 14210460 ~ 14214264 (+)
G141361 tcea1 other upstream 310109 13855603 ~ 13858605 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 1308387 12842798 ~ 12860327 (+)
G141086 NA other upstream 1425261 12741473 ~ 12743453 (+)
G140930 NA other upstream 1787160 12378996 ~ 12381554 (+)
G140931 NA other upstream 1928089 12237988 ~ 12240625 (+)
G141410 NA other downstream 9873 14180665 ~ 14200998 (+)
G141495 NA other downstream 357348 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 608389 14779181 ~ 14784812 (+)
G141740 LOC108440267 other downstream 883865 15054657 ~ 15056973 (+)
G141791 NA other downstream 1057918 15228710 ~ 15285457 (+)

Expression


Co-expression Network