G141406 (march6,LOC107664076)


Basic Information

Item Value
gene id G141406
gene name march6,LOC107664076
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14172226 ~ 14173432 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191429
GTTAAACATTAATGAAGTGAAAACTCCTACGTTCCAGGATCACAACTGACTTTATTCACCAGACATTAATTTCCATTATCAATGTAGGACGGGGGTGAAATTCTGAAGACACAAAAACTCTAGCTGATTTTTAacctcagactgtggaagagtggAAGAGCTAAAATGAACAAGATGTTTCAGGAGACAGTCCTGCCCTTACCTTAAAGGAATGATGAAGTTATTAAGGAGATAAGGGAAGCATAGATAATTTTCTTGTCAGAGAGCTCATTTCATACTAATTTTAAACCCCTGGGTGACAACCGAGAACTCACTTGTCGTTCTTGATGTGCTCATAAAGGCGCTTGAATTGTCGGATTTGGAAAGAGAGTATTCCCATCAGAACCACGACCATCAGCAGGAAGGGGTAGATTCTCCTCTGAACCAGGTTCTGCATCTCCATTGTGACTCCTACGATTGGGACGATGCCTACAGCAATAACATAGGgcacacagagagacagcagCAGCACGGCGATGACTGGGGCCGCCAGCTTTCGGATGATGAAATGGAGGTCAATGTTGCGGATTCCATTGGCATACACCTGGAGTGCAAGAAAGTCATACTTTAGAAGCATTCTGTAAAAAGCTACACTCACCAAGCAATTCACTGAAAACATCTTATTTAATATATCCATACTAATGTATCCCTAATGATGTATTAGGAATAAACTAATATGGGTGAGACACCTCCCTCCCTTTGCCTTCAAACAGATTCAATAATATTTCTGTCTGACACCCACTGTGATTTTGTCTGGTAGATGGTTGGTTAGCAGGCCAATCTCAATGGGGAGATATCTGGCTTAAGACACTAATTATGGCACAGATGCTGCAAGATGTTGAAAACATTCAGGTTCATGTTGACATGGCTGCTTAATGCaatttattttgacttttaaaattcCTTCCTGTTACAATAAAGTTAAGTTTATTGCCAAAGATGCTCTATAGGATATATGCAGTTCTGGTGACTGGGAGGGCCATTGAATACTGGATTACGGTCACCCAAGGACGAACAAAGCAGCAACCATAGTAAAACAGCCTGTGG

Function

symbol description
march6 Predicted to enable zinc ion binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 3. Orthologous to human MARCHF6 (membrane associated ring-CH-type finger 6).

NR:

description
E3 ubiquitin-protein ligase MARCH6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191429 True 1086 lncRNA 0.41 2 14172226 14173432

Neighbor

gene id symbol gene type direction distance location
LOC103035806 ctnnd2,ctnnd2b,LOC107746909 coding upstream 29615 13938285 ~ 14142611 (+)
gpr141 NA coding upstream 253614 13900908 ~ 13918612 (+)
LOC103040707 NA coding upstream 289381 13866287 ~ 13882845 (+)
rgs20 rgs20,LOC108440656 coding upstream 325275 13796394 ~ 13846951 (+)
LOC103030306 NA coding upstream 735023 13393377 ~ 13437203 (+)
LOC111194316 NA coding downstream 42678 14216110 ~ 14219347 (+)
LOC103037989 puf60,LOC108268151,LOC107598708,LOC107742128,LOC107659444,LOC105889354 coding downstream 83440 14256872 ~ 14269906 (+)
scrib scrib coding downstream 99397 14272829 ~ 14408400 (+)
LOC103039154 LOC103039154,LOC108440646,LOC108268154 coding downstream 278908 14452340 ~ 14458287 (+)
LOC103039460 LOC108268156 coding downstream 288558 14461990 ~ 14472520 (+)
G141405 NA non-coding upstream 1434 14168714 ~ 14170792 (+)
G141324 NA non-coding upstream 322244 13793016 ~ 13849982 (+)
G141329 NA non-coding upstream 341196 13826703 ~ 13831030 (+)
G141323 atp6v1h non-coding upstream 380868 13758683 ~ 13791358 (+)
G141311 NA non-coding upstream 524154 13647861 ~ 13648072 (+)
LOC111194315 NA non-coding downstream 8612 14182044 ~ 14198647 (+)
G141413 NA non-coding downstream 11775 14185207 ~ 14191053 (+)
G141415 march6,LOC107686038,LOC107746911,LOC105900596 non-coding downstream 29557 14202989 ~ 14208816 (+)
G141459 fam173b,LOC108440663,LOC106941709,LOC107578923 non-coding downstream 37028 14210460 ~ 14214264 (+)
G141467 NA non-coding downstream 49131 14222563 ~ 14236652 (+)
G141361 tcea1 other upstream 313621 13855603 ~ 13858605 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 1311899 12842798 ~ 12860327 (+)
G141086 NA other upstream 1428773 12741473 ~ 12743453 (+)
G140930 NA other upstream 1790672 12378996 ~ 12381554 (+)
G140931 NA other upstream 1931601 12237988 ~ 12240625 (+)
G141410 NA other downstream 7233 14180665 ~ 14200998 (+)
G141495 NA other downstream 354708 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 605749 14779181 ~ 14784812 (+)
G141740 LOC108440267 other downstream 881225 15054657 ~ 15056973 (+)
G141791 NA other downstream 1055278 15228710 ~ 15285457 (+)

Expression


Co-expression Network