LOC111194315


Basic Information

Item Value
gene id LOC111194315
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14182044 ~ 14198647 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191434
TCTTCTTGAACAGCCTGCTGAAAAAGTGTGAATTGGTGTTGTAGTGAACGCCATCTATTTTCTTGTTTTGCAGCTTCTTTTCGCCATGCCTCATCTCTTTCTTGCTGTCGAAGAAGAAATAACTGGAGGGACGCTGCAAGCTGCTCCACATCTGGGGTTGAAGTCTTTTGCTCTTTTGCAGCAGCTTCATCCATAATGGGAAGATTCGTTGCCCTCTTGACTCTTTCAGTCGATTCACTGAGTCGACTCCTTGCTGAGTTTCGGTTCGCAGGGCTTGAACGGatctccgttttttttttttttttttttccacccgttttcgtcCCAGACTATAACTGCTGCAGCGGATCCCGGGGCTCTTATTTTGACAGGCGTTGTTTGGGCGCGTCACAATCCGCTCCTTGCTCCCTTCGTAGTGTACTTCCGGGTGCTCGCGTTGGCTTCTAGCGGTGTTTAGGACCACACAGCCGGCGACTTCTCCCTCTGTTGCACCGCGGCGAAGCGCGTAGCGATGGAGGGAACTTTTCCGCACTTCAAAGGCGTCTTCACTACCTTCCGTCGTAGTAACGTCTCGCACTCTCTCCCTTTTTAGACCGCTGCCACCATTTGTGGTAGTGTGAGGACAAGTGGTCAGGAGGTTACCGGAGAGAGGTGAGGCAGAGACGCAAAAACAGTCTGGAACCAGGTACCCCCAGGCTCCCCTGCCCCAGGACACCCCTTGGTCTCTACCCAGACCTTAAGGACCCGGGTGGCTCGCGCGCCGCCATTTCCACAGGATCCAGGTAAgtactgtgtttgtgtaaaaatgtctttgcaGGTAAAATGTCTCTGGAG
>TU191437
TGTGGTAGTGTGAGGACAAGTGGTCAGGAGGTTACCGGAGAGAGGTGAGGCAGAGACGCAAAAACAGTCTGGAACCAGGTAAGAATCCctttagaagtgtttattgtgaCAAATTAAGCACCCGaacccaaaaacaaaaatgaaaacaaaacgaaatttacaatatatatacaaactatTTACACGCTACACTGGTAGGAGTTAAAGGTGGATTGGCAGCTACCACCACAAACGCTAATACTCAGCACAATAAACTCCCGTCGGCATACCAGCCACGCTCAACCAGCCCCCCAATAGTGTACCCGCCTGCCTTTAAATACCTTTAGCCCATCCCCGGCTAAACCAACAAGTAATTAACTTGAGGGCAGGTGGGTAAGACAACTATACATGATTGTATATGtacaatattaacatatttacaaacAGAATGACATGCATGTAAACATTTGGACGTCCAGGTAAGTATTGATGATAATTTTACAatgttaatgtattattttctctgttctctttttcACAGGTACCCCCAGGCTCCCCTGCCCCAGGACACCCCTTGGTCTCTACCCAGACCTTAAGGACCCGGGTGGCTCGCGCGCCGCCATTTCCACAGGATCCAGGTACCCCCAGGCTCCCCTGCCCCAGGACACCCCTTGGTCTCTACCCAGACCTTAAGGACCCGGGTGGCTCGCGCGCCGCCATTTCCACAGGATCCAGGTAAgtactgtgtttgtgtaaaaatgtctttgcaGGTAAAATGTCTCTGGAG
>TU191438
TCTTCTTGAACAGCCTGCTGAAAAAGTGTGAATTGGTGTTGTAGTGAACGCCATCTATTTTCTTGTTTTGCAGCTTCTTTTCGCCATGCCTCATCTCTTTCTTGCTGTCGAAGAAGAAATAACTGGAGGGACGCTGCAAGCTGCTCCACATCTGGGGTTGAAGTCTTTTGCTCTTTTGCAGCAGCTTCATCCATAATGGGAAGATTCGTTGCCCTCTTGACTCTTTCAGTCGATTCACTGAGTCGACTCCTTGCTGAGTTTCGGTTCGCAGGGCTTGAACGGatctccgtttttttttttttccacccgttttcgtcCCGCTTCTGCTGCAGCGGATCCCGGGGCTCTTATTTTGACAGGCGTTGTTTGGGCGCGTCACAATCCGCTCCTTGCTCCCTTCGTAGTGTACTTCCGGGTGCTCGCGTTGGCTTCTAGCGGTGTTTAGGACCACACAGCCGGCGACTTCTCCCTCTGTTGCACCGCGGCGAAGCGCGTAGCGATGGGAACTTTTCCGCACTTCAAAGGCGTCTTCACTACCTTCCGTCGTAGTAACGTCTCGTACTCTCTCCCTTTTAGACCGCTGCCACCATTTGTGGTAGTGTGAGGACAAGTGGTCAGGAGGTTACCGGAGAGAGGTGAGGCAGAGACGCAAAAACAGTCTGGAACCAGGTAAGAATCCctttagaagtgtttattgtgaCAAATTAAGCACC
>XR_002651024.1
tacaaacAGAATGACATGCATGTAAACATTTGGACGTCCAGGTAAGTATTGATGATAATTTTACAatgttaatgtattattttctctgttctctttttcACAGGTACCCCCAGGCTCCCCTGCCCCAGGACACCCCTTGGTCTCTACCCAGACCTTAAGGACCCGGGTGGCTCGCGCGCCGCCATTTCCACAGGATCCAGGTACCCCCAGGCTCCCCTGCCCCAGGACACCCCTTGGTCTCTACCCAGACCTTAAGGACCCGGGTGGCTCGCGCGCCGCCATTTCCACAGGATCCAGGTAAgtactgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191434 True 834 lncRNA 0.52 2 14192428 14193703
TU191437 False 766 lncRNA 0.47 2 14182044 14193703
TU191438 False 713 lncRNA 0.50 2 14192428 14198647
XR_002651024.1 False 309 lncRNA 0.54 2 14182461 14193663

Neighbor

gene id symbol gene type direction distance location
LOC103035806 ctnnd2,ctnnd2b,LOC107746909 coding upstream 39433 13938285 ~ 14142611 (+)
gpr141 NA coding upstream 263432 13900908 ~ 13918612 (+)
LOC103040707 NA coding upstream 299199 13866287 ~ 13882845 (+)
rgs20 rgs20,LOC108440656 coding upstream 335093 13796394 ~ 13846951 (+)
LOC103030306 NA coding upstream 744841 13393377 ~ 13437203 (+)
LOC111194316 NA coding downstream 17463 14216110 ~ 14219347 (+)
LOC103037989 puf60,LOC108268151,LOC107598708,LOC107742128,LOC107659444,LOC105889354 coding downstream 58225 14256872 ~ 14269906 (+)
scrib scrib coding downstream 74182 14272829 ~ 14408400 (+)
LOC103039154 LOC103039154,LOC108440646,LOC108268154 coding downstream 253693 14452340 ~ 14458287 (+)
LOC103039460 LOC108268156 coding downstream 263343 14461990 ~ 14472520 (+)
G141406 march6,LOC107664076 non-coding upstream 8612 14172226 ~ 14173432 (+)
G141405 NA non-coding upstream 11252 14168714 ~ 14170792 (+)
G141324 NA non-coding upstream 332062 13793016 ~ 13849982 (+)
G141329 NA non-coding upstream 351014 13826703 ~ 13831030 (+)
G141323 atp6v1h non-coding upstream 390686 13758683 ~ 13791358 (+)
G141415 march6,LOC107686038,LOC107746911,LOC105900596 non-coding downstream 4342 14202989 ~ 14208816 (+)
G141459 fam173b,LOC108440663,LOC106941709,LOC107578923 non-coding downstream 11813 14210460 ~ 14214264 (+)
G141467 NA non-coding downstream 23916 14222563 ~ 14236652 (+)
LOC111194202 NA non-coding downstream 242258 14440905 ~ 14442332 (+)
G141501 NA non-coding downstream 286373 14485020 ~ 14486617 (+)
G141361 tcea1 other upstream 323439 13855603 ~ 13858605 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 1321717 12842798 ~ 12860327 (+)
G141086 NA other upstream 1438591 12741473 ~ 12743453 (+)
G140930 NA other upstream 1800490 12378996 ~ 12381554 (+)
G140931 NA other upstream 1941419 12237988 ~ 12240625 (+)
G141495 NA other downstream 329493 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 580534 14779181 ~ 14784812 (+)
G141740 LOC108440267 other downstream 856010 15054657 ~ 15056973 (+)
G141791 NA other downstream 1030063 15228710 ~ 15285457 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other downstream 1186969 15385616 ~ 15401904 (+)

Expression


Co-expression Network