G141415 (march6,LOC107686038,LOC107746911,LOC105900596)


Basic Information

Item Value
gene id G141415
gene name march6,LOC107686038,LOC107746911,LOC105900596
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14202989 ~ 14208816 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191444
CCTGCAAAAATGTCCTGTACGGGGAGCCGTGAAGGCATGTCTGGGGAATAGaTTGGCGTGAAAGCAAATCTGTGCTTGCATAATTCGCAGTACTCTTTTCTGCTGTGTTTCAGCCACTGCaccaagCATTCTTGATGAATGAATTTAATACTTCCAGTGCAGACACAGGGGTGGTAGAGGGGTTTGTCTAGAGTTCCCTCAGACCGACACACTCTACATATGTCagCCTCTTCTCCAGTGTCCATCTTGTCGCTGGTCGTGACGCACTGTCCTCTTTACAGTCCGCTCATAACCCCGATCCGCTACAGCTGGAAAACAACAACAGCTTCCTAACGcctcaccaacacacacatcTCCAGACCAGCCGCACACCGGACACCAGCTCCGCACACCGGACACAACCGCTCAGTTTAgtgttagctaactaacccCCTTCAGACGCCCACAAAACCTGTGTTCGGTAAAATGTCAGTGAACTACATCTCC

Function

symbol description
march6 Predicted to enable zinc ion binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 3. Orthologous to human MARCHF6 (membrane associated ring-CH-type finger 6).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MARCH6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191444 True 486 lncRNA 0.51 4 14202989 14208816

Neighbor

gene id symbol gene type direction distance location
LOC103035806 ctnnd2,ctnnd2b,LOC107746909 coding upstream 60378 13938285 ~ 14142611 (+)
gpr141 NA coding upstream 284377 13900908 ~ 13918612 (+)
LOC103040707 NA coding upstream 320144 13866287 ~ 13882845 (+)
rgs20 rgs20,LOC108440656 coding upstream 356038 13796394 ~ 13846951 (+)
LOC103030306 NA coding upstream 765786 13393377 ~ 13437203 (+)
LOC111194316 NA coding downstream 7294 14216110 ~ 14219347 (+)
LOC103037989 puf60,LOC108268151,LOC107598708,LOC107742128,LOC107659444,LOC105889354 coding downstream 48056 14256872 ~ 14269906 (+)
scrib scrib coding downstream 64013 14272829 ~ 14408400 (+)
LOC103039154 LOC103039154,LOC108440646,LOC108268154 coding downstream 243524 14452340 ~ 14458287 (+)
LOC103039460 LOC108268156 coding downstream 253174 14461990 ~ 14472520 (+)
LOC111194315 NA non-coding upstream 4342 14182044 ~ 14198647 (+)
G141413 NA non-coding upstream 11936 14185207 ~ 14191053 (+)
G141406 march6,LOC107664076 non-coding upstream 29557 14172226 ~ 14173432 (+)
G141405 NA non-coding upstream 32197 14168714 ~ 14170792 (+)
G141324 NA non-coding upstream 353007 13793016 ~ 13849982 (+)
G141459 fam173b,LOC108440663,LOC106941709,LOC107578923 non-coding downstream 1644 14210460 ~ 14214264 (+)
G141467 NA non-coding downstream 13747 14222563 ~ 14236652 (+)
LOC111194202 NA non-coding downstream 232089 14440905 ~ 14442332 (+)
G141501 NA non-coding downstream 276204 14485020 ~ 14486617 (+)
LOC111194203 NA non-coding downstream 308530 14517346 ~ 14518444 (+)
G141410 NA other upstream 1991 14180665 ~ 14200998 (+)
G141361 tcea1 other upstream 344384 13855603 ~ 13858605 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 1342662 12842798 ~ 12860327 (+)
G141086 NA other upstream 1459536 12741473 ~ 12743453 (+)
G140930 NA other upstream 1821435 12378996 ~ 12381554 (+)
G141495 NA other downstream 319324 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 570365 14779181 ~ 14784812 (+)
G141740 LOC108440267 other downstream 845841 15054657 ~ 15056973 (+)
G141791 NA other downstream 1019894 15228710 ~ 15285457 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other downstream 1176800 15385616 ~ 15401904 (+)

Expression


Co-expression Network