G141467


Basic Information

Item Value
gene id G141467
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14222563 ~ 14236652 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191513
GCCAGTTCTCTCTTTTAATGGTTCATTGGAAGTTGgggaaaaatacaagaaatacaACAAGCATTTGAACTTTAACACATTAATACAAATGGCTATGAAACATATCATACCAAAAGGCCTTTGCAAACCAAAATAAAGAACAGATGATAGCTGACTTACGTTAGTACAGGGTCCACAGAAAGCTgtcaaaataccaaaaaaaaataaaagaagaacatTTAGAAgtgcccaaaaaaaaagaaggcatcagtattagatttatttttcaaatacattaacatcaaatttaaaaataactcaTTTTTACCTTTCAACAGGAAAGATATTTGTATAACACTCACTATACAAATATCtcacaaaaaatagttttgAGGAAGTGCCTCGaactagaaTGTGATGAGCAGACAAAGCATCCCATTCCATCTCACTTGATTGGCTCGACtgttaaaattatgattttcttttaatttagtgAGTCATTTAAACATTATCGAAAGTGTCTCACCCCAACTTGCAGTCACCTCTATTTGACAGCAGGTTGAATATGTCTGTCTGGAAGTCAGTGGGATTGAACATACTGCATAGACAGGTAAAGCAAAAAACTCTTAAGTATGCAGATTGTTCAAACTAAAGTACACGCAGGAAGTCATATATGTATcacatataaattaaagaaatgctTTAGTTGAAACCATCAATAAACAGCAACTTGCTGTCTAGTAGTCATAAAAAACTAAGCCATTTATTAACATGACAAACTTTATATACAAGGCAGACAACAGAAAATCTACAGAACTGTTGTTCTCTTTCAGTAGTGGAGTTAAAGAGAGAACAAAAAATCAGCAGTAAACCAGAGTTCAATCATGTTGCTAAGAAAACAATGTAATGTTTAGTTTTGGTGGTCCTCCCATGCACAGATCAGATCTCAATGCagccagagaaaaaaaaacattcacaatTTAGCTGCTggggcagtattagcattagccgctaaccatgctaagcgctagttagctctaTTGCctttcagaggcgagtatatctgATGATAGGACTTctgctaaccctgactagcactgctagagcagcattagcattacctgctaactgcgctaagtgctagttatctctttcgctgttcagaggtgagtattatgggactgtagtctgcgtgtttaccatcttaaaacaagctacatgggatgaaccgctagctaatttCACCCTGACTTACCAGaagactcagggttcctcagtatagcGCAGTCTGGCAGCCTTGGtagtaatctaagcttactgtaaataaacggaagtgctttactcacccaaataaaaagtatacaggagagaaatctgtgtaaattaacaaacaaccagcgcttgtttgactataaaatattttttaacatagcTTTACAAGTCTTGCCACCCAGCGGCGAGGCCTGCTAAATTAGGAGGAAATCAtgccaacacccctgttccttactagtgtcacataatgcgccatataatctggtgcaccttgtgtatgaaaataaaccagaaaatagatgtttattgatgggGCGCCTTATAATtctgtgtgccttatagtgttaAATACTGTACTTTAGCATCTGACTAGGAAGGATATATTTAGTGTATGGACTACAtgctgcactgtttaaagcaacAGTTTTCCCTCAATACAAGTTCAATTGGGAGCTGGACTGATTTTAGGTGAGTCACTGCCCATTTCCATCACTAATCTCAATGCACTTGTGCTTCTTGAATGCTTGTGAAAACCTAAAGCTCtctccacactctgagcagtaatatggtttatctccagtgtgaatgcgctggtgtatttggAAGTAACTCTGTTTGCgaaagctcttcccacagtctgagcagtgatatggtttcccTTTTGTGTGAATGACGTGGTGTTTTTGGAATGAACTGTAAtaattaaaactcttcccacagtctgagcagtggtatggtttctctcctgtatgaACGCGCTGGTGTTCTATGAGATAATTATTTCTAacaaaactcttcccacagtctgaGCACTGAaagggtttctctccagtgtgaatgcgctggtgttcttGGAGATTCGTCAGTTcactaaaactctttccacattcCAAGCACTGatgcggtttctctcctgtatgaACGCGCTCGTGGCGCCGGAGATTACTCTGGAGATTGAAAgttttcccacagtctgaacattgaaatggtttctctcctgtgtgaatgagcaGATGTCGTTGGAGAGTACTCAGAAAATCAAAGCTTTTCCGAcaatctgagcagtgatatggtttctctctaGTGCGAATGTGTTGATGTTCTTGGAGACTGGACTTTTCAGACTTTTCACTAAAACTCTTCTCAAATTCTGAGCTctgattcattttcttttcagtgtgaatgcgctggtgttcttTGAGATTCATTTGTTCAcaaaaactctttccacactccGAGCACTGatgcggtttctctcctgtgtgaacgcgctggtggcGGCGGAGATTACTCTGAAGGTTGAAAgttttcccacagtctgaacactgaaatggtttctctcctgtatgaATGAGCTTGTGTCTTTGGAGAGTACTCAGAAAATCAAAGCTTTTCCCAcaatctgagcagtgatatggtttgtCCCCGGTGTCAGAAAGCTGGTGTGTTCTGAGATGACTcggttgagtaaaactcttgcCACAGTCAGAGTGGTGGTCagtttgttttttctctgtacTGTGCTGCACTTGCCTGTGAGGTGAAGGAGAAGATATTTGCTGAGTATTGGAGATTTCTCTGGATGCCATGTCTGTCGCCATGCTGTTTCATCAGCATCAACGGCTTTGTGAACTAGTCAGACGTTGTTTTCAACCAGGCAGGGAAGTAGATACTAGGAGCAGCAGAAGACTTGAAACAGGATGGCATCCATTTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191513 True 2967 lncRNA 0.40 3 14222563 14236652

Neighbor

gene id symbol gene type direction distance location
LOC111194316 NA coding upstream 3216 14216110 ~ 14219347 (+)
LOC103035806 ctnnd2,ctnnd2b,LOC107746909 coding upstream 79952 13938285 ~ 14142611 (+)
gpr141 NA coding upstream 303951 13900908 ~ 13918612 (+)
LOC103040707 NA coding upstream 339718 13866287 ~ 13882845 (+)
rgs20 rgs20,LOC108440656 coding upstream 375612 13796394 ~ 13846951 (+)
LOC103037989 puf60,LOC108268151,LOC107598708,LOC107742128,LOC107659444,LOC105889354 coding downstream 20220 14256872 ~ 14269906 (+)
scrib scrib coding downstream 36177 14272829 ~ 14408400 (+)
LOC103039154 LOC103039154,LOC108440646,LOC108268154 coding downstream 215688 14452340 ~ 14458287 (+)
LOC103039460 LOC108268156 coding downstream 225338 14461990 ~ 14472520 (+)
LOC111194238 NA coding downstream 240902 14477554 ~ 14488421 (+)
G141459 fam173b,LOC108440663,LOC106941709,LOC107578923 non-coding upstream 8299 14210460 ~ 14214264 (+)
G141415 march6,LOC107686038,LOC107746911,LOC105900596 non-coding upstream 13747 14202989 ~ 14208816 (+)
LOC111194315 NA non-coding upstream 23916 14182044 ~ 14198647 (+)
G141413 NA non-coding upstream 31510 14185207 ~ 14191053 (+)
G141406 march6,LOC107664076 non-coding upstream 49131 14172226 ~ 14173432 (+)
LOC111194202 NA non-coding downstream 204253 14440905 ~ 14442332 (+)
G141501 NA non-coding downstream 248368 14485020 ~ 14486617 (+)
LOC111194203 NA non-coding downstream 280694 14517346 ~ 14518444 (+)
G141514 NA non-coding downstream 309145 14545797 ~ 14547039 (+)
G141516 NA non-coding downstream 315981 14552633 ~ 14553089 (+)
G141410 NA other upstream 21565 14180665 ~ 14200998 (+)
G141361 tcea1 other upstream 363958 13855603 ~ 13858605 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 1362236 12842798 ~ 12860327 (+)
G141086 NA other upstream 1479110 12741473 ~ 12743453 (+)
G140930 NA other upstream 1841009 12378996 ~ 12381554 (+)
G141495 NA other downstream 291488 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 542529 14779181 ~ 14784812 (+)
G141740 LOC108440267 other downstream 818005 15054657 ~ 15056973 (+)
G141791 NA other downstream 992058 15228710 ~ 15285457 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other downstream 1148964 15385616 ~ 15401904 (+)

Expression


Co-expression Network