LOC111194202


Basic Information

Item Value
gene id LOC111194202
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14440905 ~ 14442332 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191575
GTGCCAGTAAACAGCACGGCTGATGAAGGACAGGTTGAGTGACCGCTGGTTTGTGAACAGCTCCTCCCTCACCagcttgttttttaaataagactttACACTCTGATCCGCTAAATCTTCTCTGTCCACCAACAGGCTGTGCACTCAGATCCTACAGTCAGCCACCATGAAAGCTGTGCTGCTTATCTGTATCTTGGGTGCTGCTCTGGTGTTGCCAGCACTGGCACAACTCAAGGGCcgtcaaaacaaacaaacaacaccaACTCCATcgatttacagtttttacactgctctaaataacaataatgaaGATGTGATGAAAATCATTTTCGGCGGAATGACGCCTGAAGAGaTACAAGCATGgaaggaaaaacaacagcaacaaaataATGGCCCTCCATGCTAGAATGGAAGTGCAGTGGAACCGTGTATCAGTGAAGCAGTGAACCTGACCAAGAAATCAAATGATCATCTGTTCCAGAACTTACATATGATACAAGTAAATCTGTGAAAAACATTCTG
>XR_002650985.1
tcaaaacaaacaaacaacaccaACTCCATcgatttacagtttttacactgctctaaataacaataatgaaGATGTGATGAAAATCATTTTCGGCGGAATGACGCCTGAAGAGaTACAAGCATGgaaggaaaaacaacagcaacaaaataATGGCCCTCCATGCTAGAATGGAAGTGCAGTGGAACCGTGTATCAGTGAAGCAGTGAACCTGACCAAGAAATCAAATGATCATCTGTTCCAGAACTTACATATGA

Function

GO:

id name namespace
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU191575 True 522 lncRNA 0.44 4 14440905 14442332
XR_002650985.1 False 254 lncRNA 0.39 3 14441676 14442304

Neighbor

gene id symbol gene type direction distance location
scrib scrib coding upstream 32505 14272829 ~ 14408400 (+)
LOC103037989 puf60,LOC108268151,LOC107598708,LOC107742128,LOC107659444,LOC105889354 coding upstream 170999 14256872 ~ 14269906 (+)
LOC111194316 NA coding upstream 221558 14216110 ~ 14219347 (+)
LOC103035806 ctnnd2,ctnnd2b,LOC107746909 coding upstream 298294 13938285 ~ 14142611 (+)
gpr141 NA coding upstream 522293 13900908 ~ 13918612 (+)
LOC103039154 LOC103039154,LOC108440646,LOC108268154 coding downstream 10008 14452340 ~ 14458287 (+)
LOC103039460 LOC108268156 coding downstream 19658 14461990 ~ 14472520 (+)
LOC111194238 NA coding downstream 35222 14477554 ~ 14488421 (+)
LOC103041924 NA coding downstream 46099 14488431 ~ 14500190 (+)
LOC111194240 NA coding downstream 69461 14511793 ~ 14512939 (+)
G141467 NA non-coding upstream 204253 14222563 ~ 14236652 (+)
G141459 fam173b,LOC108440663,LOC106941709,LOC107578923 non-coding upstream 226641 14210460 ~ 14214264 (+)
G141415 march6,LOC107686038,LOC107746911,LOC105900596 non-coding upstream 232089 14202989 ~ 14208816 (+)
LOC111194315 NA non-coding upstream 242258 14182044 ~ 14198647 (+)
G141413 NA non-coding upstream 249852 14185207 ~ 14191053 (+)
G141501 NA non-coding downstream 42688 14485020 ~ 14486617 (+)
LOC111194203 NA non-coding downstream 75014 14517346 ~ 14518444 (+)
G141514 NA non-coding downstream 103465 14545797 ~ 14547039 (+)
G141516 NA non-coding downstream 110301 14552633 ~ 14553089 (+)
G141525 NA non-coding downstream 123052 14565384 ~ 14567961 (+)
G141410 NA other upstream 239907 14180665 ~ 14200998 (+)
G141361 tcea1 other upstream 582300 13855603 ~ 13858605 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 1580578 12842798 ~ 12860327 (+)
G141086 NA other upstream 1697452 12741473 ~ 12743453 (+)
G140930 NA other upstream 2059351 12378996 ~ 12381554 (+)
G141495 NA other downstream 85808 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 336849 14779181 ~ 14784812 (+)
G141740 LOC108440267 other downstream 612325 15054657 ~ 15056973 (+)
G141791 NA other downstream 786378 15228710 ~ 15285457 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other downstream 943284 15385616 ~ 15401904 (+)

Expression


Co-expression Network