G141501


Basic Information

Item Value
gene id G141501
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14485020 ~ 14486617 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191588
GCAAAACTTCGGCCACTAAAAAAGTTCTAAGGCAATAGCAACCGCTGCCCACGGCGTTGATGAATATGTTAAAACACGGAATCGTAAAAGTAGAATTTCTGCAAGAAAGGTACATGCCAATCATGAAACAAAACATAGCACAGGCAACACAAAATTAACCCAATAAAAGGCAGCAAATCACCAGAATTAGACCAGGTACGGAGTCAGTGCAGTCCACGAATCACGTAATCGAGAACCTGTGCAGTACTTTACATACAAGCAGCATCGGACACGAGTCCAATCAAGCAGCGGAGCGGGCACGGCCTGagacaataaacaacgcggacagcgagtacagtaaagcattagagcgggcacggcccgagacaataaacaacgcgaactgcgagtacggtaaagcattagagcgggcacgcccgagacaataaacaacgcgaactgcgagtacggtaacgcattagagcgggcacgcccgagacaataaacaacgcgaactgcgagtacggtaaagcattagagctggcacggcccgagataataaaccacgcggactgcgagccagtaaagcattagagcgggcacggcccgagataacaaacaacgcggactgcgagtacggtaaagcattagagctggcacggcccgagataataaaccacgcggactgcgagccagtaaagcattagagcgggcacggccgagataataaacacgcggactgcgagtacggtaaagcattagagctggcacggcccgagataataaaccacgcggactgcgagtacggtaaagcattagagcgggcacggcccgagattaTAAACGATGCGGACTGCGAGTATAGCAAACCATTaaagcgggcacggcccgagataataaaccgCGCAGACTGCGAGCCATTAAAGCATTacagagcgggcacggcccgagattaTGAACAACGCGAACTGAGAGtacagtaaagcattagagcgggcacagcccgagataataaacgaTGCGGACTGCGCGTACAGTAACCAtcagagcgggcacggcccgagataataaacaacgcggactgcgagtacagtaaaccattagagcgggcgcggcccgagataataaacaacgcggactgcgagtacagtaaaccattagagcgggcgcggcccgagataataaacaacgcggactgcgagtacagtaaaccattagagcgggcacggcccgagataataaacaacgcggactgcgagtacagtaaaccattagagcgggcgcggcccgagataataaacaacgcggactgcgagtacagtaaaccattagagcgggcacggcccgagataagaaACAACGCGGGCTGCGAGTACagcaaagcattagagcgggcacggcccgagataagaaACAACGCGGGCTGCGAGTACagcaaagcattagagcgggcacggcccgagataaacaacgcggacagcgagtcattaaagcattagagcgggcacggcccgagataataggCAGCGCAGAAAGCTAGACATTAAAGCAGTAAGTAGAGcaggc
>TU191590
GCAAAACTTCGGCCACTAAAAAAGTTCTAAGGCAATAGCAACCGCTGCCCACGGCGTTGATGAATATGTTAAAACACGGAATCGTAAAAGTAGAATTTCTGCAAGAAAGGTACATGCCAATCATGAAACAAAACATAGCACAGGCAACACAAAATTAACCCAATAAAAGGCAGCAAATCACCAGAATTAGACCAGGTACGGAGTCAGTGCAGTCCACGAATCACGTAATCGAGAACCTGTGCAGTACTTTACATACAAGCAGCATCGGACACGAGTCCAATCAAGCAGCGGAGCGGGCACGGCCTGagacaataaacaacgcggacagcgagtacagtaaagcattagagcgggcacggcccgagacaataaacaacgcgaactgcgagtacggtaaagcattagagcgggcacggcccgagacaataaacaacgcgaactgcgagtacggtaaagcattagagctggcacggcccgagataataaaccacgcggactgcgagccagtaaagcattagagcgggcacggcccgagataacaaacaacgcggactgcgagtacggtaaagcattagagctggcacggcccgagataataaaccacgcggactgcgagccagtaaagcattagagcgggcacggccgagataataaacacgcggactgcgagtacggtaaagcattagagctggcacggcccgagataataaaccacgcggactgcgagtacggtaaagcattagagcgggcacggcccgagattaTAAACGATGCGGACTGCGAGTATAGCAAACCATTaaagcgggcacggcccgagataataaaccgCGCAGACTGCGAGCCATTAAAGCATTacagagcgggcacggcccgagattaTGAACAACGCGAACTGAGAGtacagtaaagcattagagcgggcacagcccgagataataaacgaTGCGGACTGCGCGTACAGTAACCAtcagagcgggcacggcccgagataataaacaacgcggactgcgagtacagtaaaccattagagcgggcgcggcccgagataataaacaacgcggactgcgagtacagtaaaccattagagcgggcgcggcccgagataataaacaacgcggactgcgagtacagtaaaccattagagcgggcacggcccgagataataaacaacgcggactgcgagtacagtaaaccattagagcgggcgcggcccgagataataggCAGCGCAGAAAGCTAGACATTAAAGCAGTAAGTAGAGcaggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191588 True 1545 lncRNA 0.52 2 14485020 14486617
TU191590 False 1266 lncRNA 0.52 3 14485020 14486617

Neighbor

gene id symbol gene type direction distance location
LOC103039460 LOC108268156 coding upstream 12500 14461990 ~ 14472520 (+)
LOC103039154 LOC103039154,LOC108440646,LOC108268154 coding upstream 26733 14452340 ~ 14458287 (+)
scrib scrib coding upstream 76620 14272829 ~ 14408400 (+)
LOC103037989 puf60,LOC108268151,LOC107598708,LOC107742128,LOC107659444,LOC105889354 coding upstream 215114 14256872 ~ 14269906 (+)
LOC111194316 NA coding upstream 265673 14216110 ~ 14219347 (+)
LOC103041924 NA coding downstream 1814 14488431 ~ 14500190 (+)
LOC111194240 NA coding downstream 25176 14511793 ~ 14512939 (+)
LOC111194241 NA coding downstream 28853 14515470 ~ 14517074 (+)
trmt10b trmt10b coding downstream 61491 14548108 ~ 14551573 (+)
intu intu coding downstream 83752 14570369 ~ 14598691 (+)
LOC111194202 NA non-coding upstream 42688 14440905 ~ 14442332 (+)
G141467 NA non-coding upstream 248368 14222563 ~ 14236652 (+)
G141459 fam173b,LOC108440663,LOC106941709,LOC107578923 non-coding upstream 270756 14210460 ~ 14214264 (+)
G141415 march6,LOC107686038,LOC107746911,LOC105900596 non-coding upstream 276204 14202989 ~ 14208816 (+)
LOC111194315 NA non-coding upstream 286373 14182044 ~ 14198647 (+)
LOC111194203 NA non-coding downstream 30729 14517346 ~ 14518444 (+)
G141514 NA non-coding downstream 59180 14545797 ~ 14547039 (+)
G141516 NA non-coding downstream 66016 14552633 ~ 14553089 (+)
G141525 NA non-coding downstream 78767 14565384 ~ 14567961 (+)
G141548 NA non-coding downstream 155863 14642480 ~ 14642690 (+)
G141410 NA other upstream 284022 14180665 ~ 14200998 (+)
G141361 tcea1 other upstream 626415 13855603 ~ 13858605 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 1624693 12842798 ~ 12860327 (+)
G141086 NA other upstream 1741567 12741473 ~ 12743453 (+)
G140930 NA other upstream 2103466 12378996 ~ 12381554 (+)
G141495 NA other downstream 41523 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 292564 14779181 ~ 14784812 (+)
G141740 LOC108440267 other downstream 568040 15054657 ~ 15056973 (+)
G141791 NA other downstream 742093 15228710 ~ 15285457 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other downstream 898999 15385616 ~ 15401904 (+)

Expression


Co-expression Network