b4gat1 (b4gat1,LOC107747893,LOC107745213,LOC107696735)


Basic Information

Item Value
gene id b4gat1
gene name b4gat1,LOC107747893,LOC107745213,LOC107696735
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14779181 ~ 14784812 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191638
TGCAAAATATAACTATTAACATAGCACACACATAATGGAATCCATATATTTTCTGAGATGTTATGAGATCatctacagcagtgtttctcaaactGTGTAATACTCAAAGCATACCTACTTAGGTGGTGCACTAGAAGACCTCAGAAAATGTTTCCAACAGTAATTTTCCTAACGTAACATCAGTTTGTATTTAGTGCTTTACCTGTTAGAATCTGTATGTAAGTCTACAGTTCAGGccttcactctcagaactacagttttacttactttatttattaacatcagtttcattgGCCCTACTGTAAAAACCCTGTTGGACACCACAAGATCTGCACTATCAACCAACAGTTCACAACAGTTCCTGCATTACAGTTAATGGCTAAATAATGTAATGAACACTGTTGCGGGTTCATGGCTTGGTACTTTTCTTGTTTCTTCTGTCTAAATCCTCCGGAGATTTTGAGAAGGAATACTGTATTAACCAGAGAcaataatcaatcaaacaaatttatattttaactgaCAGACTTCAAAAGCAAAAACTTCACAGAACAGATGAAGAACAACTGGCAAAGGATaagatgtacagctctggggaaaaaaaacacttctttttttaatgagtttctctgattttgctattcataggtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttcttccaaattgcaaataaaaatagtcatttagagcatttat
>XM_007238478.3
ACGTGGACGagaagaataacagtaaaacatgCCGTCTCCTTTTCTCAGCCGTGTTTCCTTCAGCCAGTCTGTTCCAGTATTTACGGTAGAACTGCTGCTAGCTAGATTTACATGAGCACATTCACATGTTCCAAGTtagcacatgcgcagtagctaggttagctagctacacgGACTGGCACTGATTTGTGGATTTGTCTGGGTTAAACTGGATATCGAGGTAATCGCGCTGTTTGTGGACTTAAATACCTACAGGTCGAACTATGGCTGTGAGTTTGAGACACGCTGGTGTGGGACGAATAACGCTAGCAAGGTAGCTTAGCTGTGTATCTGCTGCAGATCCACGGCGAGGTTTCGGTGCAGTAGGTAGGTTGTCAACGGTGTTCTGCCGAATTGTGCTACCTATCGTTATGTGCTACGTAttggcactgcgcatgcgctgactgCCTTTATTTTTTGTCGTTTTCATATGAGGCCTGGGaggttaatctaaaaaaaatgttaaatcgAATTACTGTTTAAATCCGATTTTCAAAATGGTATGAGCGAGATTGTACATATTAACATCTAGAagctgtcagaaacctgtaaataaCTGTTTCATGTGGCAGTAATACATATTTACACTTTTccgtaaaaaaaactgtatgtaaGGTTGAAGGGGTCTGCTTTCTATCTGGTATAAAAAACCCTgattgaaattaaatgtaaaggaaacaataaCTTTATAAATTGTACtgtttgattaaaaaatgtaaactaaaaatcgttcatatatttaaagaatatcctttttttttcaaaacactgCCCAGCCCTAGTCTGAGTTTCttgttattttacttttcaaatgtaaattacataaaaaaatacaaaaaatattaatgctAGTTGGCTAGCTATCCATTAAATCCCTTAAATTCTCAAAAActctttaaataatatatttcctATTAAGCCAAGAAGATATGTAATAGGTTTTTACAATATTGCCCTGCTATAATCTGAATTTACTGTTAGTTTAACTTTATATTTGCGTTATAAGTGTTAGCTacagatttaaataaataaataataataattcatatattatgctagttaactaactatccaaaaaaatccttaaaatcaCCAACTACGGTTTAAACtttacaaataatatatttgcTACATAActaaaagctaggttagctaacctacaCTACAGTTGAGGGGATTTTCTGTTATGATGCTTTTAatcctttaaaaataatataaatattaaaaatatatagctaTGTCCTATtctagtttgtgtttttttagataGTTACTTAAAGCTATGCATTTTTACCTGTAGCTAAATATACACTATGGTAGCACAATTTGGCAAGACAGCACAAACCGACAGAACACCTtctgttagcttagctagctaggtttGCTACTTAACGGTGCAGCACTAAGGTGAGGTGAAGTAGAtgagctaagctagctaataaACAGAGCCAGAGCTAAACTTTCACTTCACTTGGCTATACTCTCTGAACATCCACGTTTTGGAATGCCTTTCTCTAAAAAATGCTCCGTGTTTAAAGTGGTGCTGAGTGCCCTGCTGATAGTAGCTCTGCTGCAGCTTATCTATTTGTCGTTTCTCTCCAAGCTTCATGGTAAGCAGCAGCGCTCCACCTATTCAGAACTGTTTGGGTCCAAGAAAAATCCTCAACTTGGGGAAAAGAACTCCAAAAAGGAGCGACTAAGGTATTCCTTATCAAGTGGGGGCATTTTCGACAGCAGTGGACAGTACCGCATTTATAAGAACCTCATCAAAAGTGGTTTCTCTACCAGTCAGAAGCCAGGAGCTGACCCCAGGTCCCACCACCTCGCCCTGgccacacacaccaccatcaACAACCTCCATCACCTGGACTCTCTACTGGACCGCTGGCGTAACCCCCTGTCCATTGCCATATTTGCACATGGCCAGGATGTCCGGTTTGCCACAGCCCTTGTCTATGCCCTCAGTCTCTTCTGCCCACAGGTCCAAGAGCTGGTGGACTTCCATCTGGTCTGCCACTCTGAGGAAATGGCCAGCTTCCCAGAGCAAGACCGGGACCACTTTGCCGGCCTTGAGGAGCAAGGGTGTCCTGGCGCTTTCGCAAAACTCGAATCCTACAGAGACAAGTATAAAAACTATGCCATCGCAAGCAACGTCTCCTACCCCAACAACCTCCTCCGCAACGTGGCACGGACTGGTACTGATGCTGCCTACACCCTGGTCATCGACATCGACATGGTGCCCAGTGCAGCTCTTCACCATCAGTTCGTAACAATGCTGATGAGGCGCGAGCCGGCTCAGGATGAGGTCCTGGTGCTGCCCGCCTTTGAAATCAGACACACTCGCAAAATGCCAGCTTCCAAGGCTGAGTTGGTGCAGCTGTACCAGGTTGGTGAGGTAAGGCCCTTCTATGAGGAACTGTGCCCTCGATGCCAGGCCCCCAGTAACTACTCACGCTGGGTTAATCTGTCCACCAAGACCTCTGGGCCTTTGGAGGTGGCGTACACACTGAATTGGGTTGACCCATGGGAGCCCTTCTACATTGGCGCTAAAACAGTGCCCCTGTATGATGAGAACTTCAAGCAGTATGGATTTAACCGCATCAGCCAGGCCTGTGAGCTTCACATAGCAGGGTACAGGTTCTCTGTGGTGAGCAATGCCTTCGTGGTGCACAGAGGCTTCAAGGTCCAGGGGGAGTTCCACAGCCGTAAGGATGAGGAGAACCGCAGGAACCGAATTCTCTTCCGCAGCTTCAAAGAGGGCCTGAAGACCAAGTACCCCACGTCCCCTCGCCGCTGCTGAGGCCTAAACACACCTGAGGACTAAAGGAGTGTGCACATCTGTCACTCGTTTGGGACCCTTTAAAGGTACAATTAGTCTGTAGCTTGGGATGATCACTAGTTCACGGTGGTGAGTTTGGGACTTTTCTTGGTGATATCAGGTCAATGTTTGACGCATCAGAGAagtctctgtgctggaaaaTGACTTTGGTACAGTAGTCACGACGGTTTACGTTCTGTTTTGATGTCGGGATGTGTTATTTGGACTGTCAGAAGTAAGCTAATAATTTGTGATGGAAgtgtaaaaatctaatttattggTTTTTAAACTGTTGGAACATCTTGTATACACTGGAGAACAGGGTCTTTATGCCTACGGTACTCTGATTCTGGATGCAAAATGCATTGCCAAGGATTTTGAAATATTATCTACTTATTAACTTTACCATACTTAGTAACATTTCACTATATAATTAAATCTTTTATCAAATTATATCAACATTGTATCAAATTCCAAATACCTAGAAATTAAATATTGAGGCCATATTGAaaataatatctaaaatattaCATGATGAAAATTAAGATGGTCATATGTTGTGGCATCTTTGCTGTAAAGAAGAGCGTTTTTGTTTGTAACCAaactttaaaatgcttttaaaaaatgttaatttattgaaatacagaaacacagatttttgttttgttctatattaGAAGATCTAAAATGACTTTATGTGgtaaaaagcagttttattaGATACATACTTGAGTTCAACCaatgatttaatttagtttgaacTGCCGAACCCTTTTACAGTGTAACTTGCATTAACAAAtgacaaatgaaaatattttagggCAGCAACTCCTTGTTCCCTATAAATACTGCTCTTCCAGAACACGgtgagtgtgtttttaaatatggGGTTGAATCCACTCATTTGTTCAGTTTTGATACTAATAAGCATATACCTCCCTGGTTACAGCAGTAATTGGATGTGGTAGTAAACTAACCAAAACTTTATACTGAGTAGACTTGATCACATTTATTACTTCTGTCATTATTTGTGAACACTAGGACGGCTGTCAGCTTGTGAGCAACTGAATGTGACCTCAATTACTCTCTTCCCAAAGTCAGTTTACATTTTCTAATCTTATTGCTGTTGATCGAAACTTTTAAAGGTGGGATGtgtaataaaaaacagtaaagaagaGGAGAACATGGAATcattacagtttattacagtttagTTGTTTGCAGTACCTCAGCTACACTGCATCAATAACTAACTTAGAAAAGATTTGTTAGATTTTGTTATCATcactgagtgtgtttacatAAACTTAATCTGGTTGTAATCAGTTTTCTGTAGTCATCTGATTTATTCAAATACTAATGCAAACAGTCTGttttcctaaataaaaaaaaaacgtgtgacAGTGGTAACGGAAGTATGCAAAATATAACTATTAACATAGCACACACATAATGGAATCCATATATTTTCTGAGATGTTATGAGATCatctacagcagtgtttctcaaactGTGTAATACTCAAAGCATACCTACTTAGGTGGTGCACTAGAAGACCTCAGAAAATGTTTCCAACAGTAATTTTCCTAACGTAACATCAGTTTGTATTTAGTGCTTTACCTGTTAGAATCTGTATGTAAGTCTACAGTTCAGGccttcactctcagaactacagttttacttactttatttattaacatcagtttcattgGCCCTACTGTAAAAACCCTGTTGGACACCACAAGATCTGCACTATCAACCAACAGTTCACAACAGTTCCTGCATTACAGTTAATGGCTAAATAATGTAATGAACACTGTTGCGGGTTCATGGCTTGGTACTTTTCTTGTTTCTTCTGTCTAAATCCTCCGGAGATTTTGAGAAGGAATACTGTATTAACCAGAGAcaataatcaatcaaacaaatttatattttaactgaCAGACTTCAAAAGCAAAAACTTCACAGAACAGATGAAGAACAACTGGCAAAGGATaagatgtacagctctggggaaaaaaaa

Function

symbol description
b4gat1 Predicted to enable glucuronosyltransferase activity. Acts upstream of or within muscle cell development and protein glycosylation. Predicted to be located in Golgi apparatus. Used to study Walker-Warburg syndrome. Human ortholog(s) of this gene implicated in congenital muscular dystrophy-dystroglycanopathy type A13. Orthologous to human B4GAT1 (beta-1,4-glucuronyltransferase 1).

NR:

description
beta-1,4-glucuronyltransferase 1

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0006486 protein glycosylation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008532 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K21032 B4GAT1; beta-1,4-glucuronyltransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU191638 False 742 lncRNA 0.34 1 14784071 14784812
XM_007238478.3 True 4880 mRNA 0.39 2 14779181 14784675

Neighbor

gene id symbol gene type direction distance location
LOC103034986 NA coding upstream 7180 14759152 ~ 14772001 (+)
LOC111194324 NA coding upstream 32486 14739009 ~ 14746695 (+)
LOC111188221 NA coding upstream 46951 14726334 ~ 14732230 (+)
pfdn2 pfdn2,LOC107745204 coding upstream 70505 14705852 ~ 14708676 (+)
LOC103039980 NA coding upstream 131997 14633078 ~ 14647184 (+)
LOC103038426 LOC108440264,LOC100711751,LOC102308987,LOC104932298,LOC105026762,LOC106577861,LOC101481621 coding downstream 27467 14812279 ~ 14817396 (+)
LOC103038739 zgc:101810,LOC103038739,LOC108440263,LOC108267909,LOC107747924,LOC107692827,LOC105026763 coding downstream 34133 14818945 ~ 14827063 (+)
LOC103042634 capn1,LOC108440273,LOC106608991,LOC107728026,LOC106578020 coding downstream 537199 15322011 ~ 15366331 (+)
LOC111194243 NA coding downstream 582706 15367518 ~ 15375404 (+)
LOC103043145 LOC108440275 coding downstream 591153 15375965 ~ 15378535 (+)
G141548 NA non-coding upstream 136491 14642480 ~ 14642690 (+)
G141525 NA non-coding upstream 211220 14565384 ~ 14567961 (+)
G141516 NA non-coding upstream 226092 14552633 ~ 14553089 (+)
G141514 NA non-coding upstream 232142 14545797 ~ 14547039 (+)
LOC111194203 NA non-coding upstream 260737 14517346 ~ 14518444 (+)
G141543 NA non-coding downstream 138 14784950 ~ 14786374 (+)
G141711 NA non-coding downstream 42469 14827281 ~ 14829927 (+)
G141720 NA non-coding downstream 71957 14856769 ~ 14861370 (+)
G141724 NA non-coding downstream 178501 14963313 ~ 15000325 (+)
G141746 NA non-coding downstream 258961 15043773 ~ 15116116 (+)
G141495 NA other upstream 248885 14528140 ~ 14530296 (+)
G141410 NA other upstream 578183 14180665 ~ 14200998 (+)
G141361 tcea1 other upstream 920576 13855603 ~ 13858605 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 1918854 12842798 ~ 12860327 (+)
G141086 NA other upstream 2035728 12741473 ~ 12743453 (+)
G141740 LOC108440267 other downstream 269845 15054657 ~ 15056973 (+)
G141791 NA other downstream 443898 15228710 ~ 15285457 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other downstream 600804 15385616 ~ 15401904 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other downstream 2163570 16948382 ~ 16967950 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other downstream 2187390 16972202 ~ 16985295 (+)

Expression


Co-expression Network