G141740 (LOC108440267)


Basic Information

Item Value
gene id G141740
gene name LOC108440267
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 15054657 ~ 15056973 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191927
CTGGAGATTTTGGCTGCTCTTTGAAAAAAGAGAATTTGGCTATAAACATAATCATTCGGTAAAAAGCTACAAGATGGAAAGCTACGTTTTCCTCATTCATGACTGTAAACAAAGTTTATggagagtatttaaaaaaacaaacataaaagatTGAGTCccttttactatatttataaaaacatgTAGGCATCATGAATAAGACACTTCCAAAATGCATCTACTACGCAAAATGGCAGTTAGGCTCGTCAGTGAAGACCAGCCCCCATTactctaaaaaaacacagaggcaGACCAGAGGACCAATCCCAGCTAATGGCAACTAGTTTGCTCCTTCCTCCAGAATTGCTAATTTCCCATTTATCACCAATGGCGAGAGCAGTagctacattaaaataaaatcataaaaaataggAGGGGAGAGAATTCACAGTGTCTTTCAGCTTTCAGAATGGGTGACATGGGATGGGGAGGGGTGATACAAAACCTCACTGACCATTTACCCTTATACTCTTCACTTGGGATGTAATGGGATGGaggtgtctgtgtgtatgtatgcacTGTGGTACAAAATCAAGGCAGTTTCCCCAAATACGcatgtgttgtatgtgtgtgccTGTCTGTCATTGTGACAAATGGGCTTAacattatacacatttacaTATGTGGCCAAAGTCCCaaagacaaaagacaaacaCGCATACACAGGACCAGTCCAAGGTCAGAACACACTCCTCCTCATTCAATGCtttcattttctacattgtaattaataataaagacatCAGAACTATGAATGCAGGAATACATATGAAATTAGACAGTAGTGTAATGTGCTCCACAATTATCAGACCTTTACTTAAATGAGATGgtctgggatgagctggagcacacagtgaaagaaaaacagcagtCAACAAATGCTCAGCCCCCCTGGAGACTCCTTACACTACTAACTGACTGTTGGAAAACATTTACAGGTGGCCATCATCATAAAACTGAAGCAGGCATCAAAGCAAAAGTGACTTCAGTATGTATTCCGGTGTGTTTAccacttttgtttgtttactgtatAATGTTCTTTCATGTTGATGCCTTCAAGATTAAACAACAACGTagaaaatactaaaaacaaagaataaaacatttgagaaaaacattgaatgaaaaggtgtgtgcGCTAACGTTCAACAgatgctgtacacacacacacacatacactcacatacatacatatacacacacaaacatgtaaAAACAGCATCCAACCCTGGTCCTACACTTCACACACCTCCGGAGTAAACATACATTCAATTTATCAAAGTGTTATCAACCTCTAatcaataaaatgtgtttttatatatatacacatttatatatatatagacgtAAACTGGTTAATAGTTCACATAACTATTTCAAGCAAATCTTAAAAATCTCAAGTACAGTTTTCATTCATAGGCTACTATCAATGTAtagaaaaatgcattaaaaaaaacacatggttATCGCCTTAAAACCAAGCCTACACCTTAAAACTGTCTACAGGTTTAAGGTTTAAAGACTTTAAAGAGAGCAACTATACGTGTATGTACTGTATCATTGTACTGTATGAACGAACATGTGCCGTTTCCCTTTCGCTACCCTGACTCGCTACactggatgggtgggtggatgtgtgtgtgagaccaGAACCAAGGTCAGACATTCCAGTctttataaagaaaaagaaaaaaaaaaaaaaaaaaaaagtaaaaataaaaggcGCCCACCCTCCTAGAACCCAGACATAAGCacacatgtacacacacacacacacacacacacatatatacattatcATCTATGTCTCCCATAAACAAAATCACAGAcattctttcacacacacacacacacacacacacactctctctctctcacacacacagtgtcacagACATGGCGCGAGAAGGTGGGGGTAGAGCGGGGCGGGGGAGTAAGAGCAGACTATCGGAAGGGCGTTTCAGGGGGGTGCAGGGCGAGTTCGGAGCGGCGGAGGAGGGGCTCCTTGCGCGACGGCGGAATCGGCGGAGGCTCATACACGCGGGGCGTCGCCACGGCGATGGCGGCAGCGGCAGGCACGGGGGCGGCGGGCAGCACTGGCCTGAGGGCGTCCAGCGCGGCCACCTGAGGGGCGGGAACACCAGGGAGGGTGGGGATGCCGGGTACCGCAGCGATGGGGTTAGGACCTGGGTAAGGGACCGCTGAGTACTGAGGGTACTGGGCAAGCTGCTGGTACTGCTGGTAGTACTCTGCATA

Function

NR:

description
PREDICTED: RNA-binding protein 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191927 True 2295 TUCP 0.43 2 15054657 15056973

Neighbor

gene id symbol gene type direction distance location
LOC103038739 zgc:101810,LOC103038739,LOC108440263,LOC108267909,LOC107747924,LOC107692827,LOC105026763 coding upstream 227594 14818945 ~ 14827063 (+)
LOC103038426 LOC108440264,LOC100711751,LOC102308987,LOC104932298,LOC105026762,LOC106577861,LOC101481621 coding upstream 237261 14812279 ~ 14817396 (+)
LOC103034986 NA coding upstream 282656 14759152 ~ 14772001 (+)
LOC111194324 NA coding upstream 307962 14739009 ~ 14746695 (+)
LOC111188221 NA coding upstream 322427 14726334 ~ 14732230 (+)
LOC103042634 capn1,LOC108440273,LOC106608991,LOC107728026,LOC106578020 coding downstream 265038 15322011 ~ 15366331 (+)
LOC111194243 NA coding downstream 310545 15367518 ~ 15375404 (+)
LOC103043145 LOC108440275 coding downstream 318992 15375965 ~ 15378535 (+)
LOC103043450 LOC103043450 coding downstream 322705 15379678 ~ 15384906 (+)
trnae-uuc_20 NA coding downstream 356803 15413776 ~ 15413847 (+)
G141724 NA non-coding upstream 54332 14963313 ~ 15000325 (+)
G141720 NA non-coding upstream 193287 14856769 ~ 14861370 (+)
G141711 NA non-coding upstream 224730 14827281 ~ 14829927 (+)
G141543 NA non-coding upstream 268283 14784950 ~ 14786374 (+)
G141548 NA non-coding upstream 411967 14642480 ~ 14642690 (+)
G141750 NA non-coding downstream 10790 15067763 ~ 15070509 (+)
G141753 LOC108440269 non-coding downstream 22657 15079630 ~ 15081149 (+)
G141755 NA non-coding downstream 23563 15080536 ~ 15478957 (+)
G141757 LOC108440269 non-coding downstream 26620 15083593 ~ 15096295 (+)
G141764 NA non-coding downstream 69042 15126015 ~ 15177465 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other upstream 269845 14779181 ~ 14784812 (+)
G141495 NA other upstream 524361 14528140 ~ 14530296 (+)
G141410 NA other upstream 853659 14180665 ~ 14200998 (+)
G141361 tcea1 other upstream 1196052 13855603 ~ 13858605 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 2194330 12842798 ~ 12860327 (+)
G141791 NA other downstream 171737 15228710 ~ 15285457 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other downstream 328643 15385616 ~ 15401904 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other downstream 1891409 16948382 ~ 16967950 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other downstream 1915229 16972202 ~ 16985295 (+)
G142093 abcf3 other downstream 2001321 17058294 ~ 17073484 (+)

Expression


Co-expression Network