G141771


Basic Information

Item Value
gene id G141771
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 15154345 ~ 15209618 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191994
tgacAGACAAGAGTTTTgtgatataataaataaatataatattgcgatatttaaagacatttttgacAGACTTGTTTCATCACAATGTTTTGACAGATGAAATACATCAACACaagcagattcttaaaaactaCTTCTCAAATACTCTCTTATTCACAGCACATATCCATCATGTTGCCCACCTCCATAATATAATAGGGTCATATTTCATCTATTCatctattgtttaatatcacCCGTTCCCAGCAGGGGTATatgatatggacaaaagtgtaaAATGTGATAACTGTTGGAAATTGATGTGAAACAATGTGACTTAAGATCCTAAATAATTTAAGCTCATCAAAGAATTTTCAGCACTTATCTGTCTCAAGTACCTGTAGCTTGGTGTAtgtgttcactgtggacctctacctcgctctacctccagcctcaTCATGTCAGGTGAGCAGTCTGTAGTGTAAAGGGGTAAAGAGCTCCCTTTTTTGCTGCATGCAGgtaatgcagtttgagtttgctgctgtttacatTGTTCCAGCAGCTGTTTCATTGTGTTTATTgcaaaaacatacagctctggaaaaaaaaaataagagaccacaaagtttctttgattttaaccaaattgaaaacctttggaatataatcaaaaggaagatgaatgatcacaaaccatcaaaccaagctgaactgtcaaagttatccaaaagcagtgtgtaaaactggtggaggagaacatgccaagatgaatgaaaactgtgattaaaaaccagggttattccaccaaatactgatttctgaactcttaaaactttatgaatatgaacttgttttctttgcattaattgaggtctgaaagctctgtgtctctttgttatttcagccatttctcattgtctgcaaataaatgctctgaatgaccattttttttatatgttcattttactcaaacatacacctataaatagcaaaatcagcgaaactgatttagaaacctttttccacagctgtatatcgctataaaaatagaaatatgatATATCTTACAGCCCTAGTTGCCAGATTTTTTAATCAGTCAGGCCCTTCTCCTGATTACCAGCTTTTGCTGTAGCTACAAAATTGTGCTGACTTTAGTAAATCAGGTCTTGTAAGCTGGAGTGAGAAAATGATGACTGTATTTCGGCTGTACAAATGACTCATTTCTGATCAGTGTGCTCGGAATTCCACTGCTGTTTTGTTCAGTTAGGACAACGTAACGGTCACATCACACGAAACACAGATTACACCATTACTGGACAGAGGCCCGACACAAACCAGGCATCATAACAGACTGAGAACaccacagagacagagagacagagagatacacacacactgttcacatTCAGACCGCCAGACAGCAGCGGCGGCGGTGGAGAGACCACATTAAAGACGATCAGCGTGGAGGCTGGAAATGGAATGAAATACGTCTCCGTCTCTGTCAGAAGAGGTTTTTGCATTGAAACAGGTAACAGTGGAGGAAGTGGCCATGCTCGAAAAAACCCATTACACCAACAACACTGACCCACGGCCTCCGTCTGATATAAAATGTAACAGCTGACACAGTTTGGCAGTGACATTTCCATTCTTCTAACATCCCCTTGGTTCCCTTTGTCATTACAAACAACCCCATATATCACATTTTCCatacatttcataaaaaaagcaCAGTTTAACAACATTgggtcattaaaaaaaaaaaagccaaaacatGGCCCAACACGGCTGCACTGGATCATTTCAACAAATGAGTTatgtatgtttgcatgtatgtatgtaggttTTGACACAAACTTGACACACAGCTTAATGTAAAAGTGTTTTGCCTTAAAATGATTTTGCACAAAGAACTTCCACTTCCAACATGCCACGCATTACAATCAGAACTTATTTGAAACTGTATTTTCACTGGATATTCTCTTTGGTTTTTGATGTCATTTCAATATTTAAAGATGGCACTATGTTATAATTGACCAAAGTACATACATTTCCTGAACTGGGTGAATGCACTGACTTTTCCAATCACTCGTAGAAGCTCACCTGAGGTCACTTTAATCACACTCAATtaacaaaaacacactgtaaaacaacaGGTTTACAGCAGAAGGACAACACCTTCTAATTAACTTTTATTGGGAACCAATGGAGAaagattttatttaagatttacaTTTTTGGGGCATTTCGATTGGTCTATTTCTCATGACTTTGATGAATGAGGTtcaatttaaataacaaaaaatgccaCATTCAAATTAGGCCAACAAAGTTTAAAATTGAGATAAAAAGATTTTGCATGGTAGCGATGATATTTTGTATTTAGATGCAAAAACTTCTTTATTAGATAGGGATGGGCAATATGGCATCAATACATCATGATACAAGATACgtcaacatacagctctggaaaaaaaataaataaataagaccacttaaaaatgatgagtttctttgattttaccaaattaaaaaccactggaatataatcaagaggaagatggatgatcacaagccatcaaaccaaactgaactgcttggatttctGCACCAGAAGTgacattaagttatccaaaagcagtgtgtaagactggtggaggagaacatcccaAGTtgctctaaataataatatttttatttggaatttgggagaaatgttgtccatactttatagaataaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191994 True 2717 lncRNA 0.36 2 15154345 15209618

Neighbor

gene id symbol gene type direction distance location
LOC103038739 zgc:101810,LOC103038739,LOC108440263,LOC108267909,LOC107747924,LOC107692827,LOC105026763 coding upstream 327282 14818945 ~ 14827063 (+)
LOC103038426 LOC108440264,LOC100711751,LOC102308987,LOC104932298,LOC105026762,LOC106577861,LOC101481621 coding upstream 336949 14812279 ~ 14817396 (+)
LOC103034986 NA coding upstream 382344 14759152 ~ 14772001 (+)
LOC111194324 NA coding upstream 407650 14739009 ~ 14746695 (+)
LOC111188221 NA coding upstream 422115 14726334 ~ 14732230 (+)
LOC103042634 capn1,LOC108440273,LOC106608991,LOC107728026,LOC106578020 coding downstream 112393 15322011 ~ 15366331 (+)
LOC111194243 NA coding downstream 157900 15367518 ~ 15375404 (+)
LOC103043145 LOC108440275 coding downstream 166347 15375965 ~ 15378535 (+)
LOC103043450 LOC103043450 coding downstream 170060 15379678 ~ 15384906 (+)
trnae-uuc_20 NA coding downstream 204158 15413776 ~ 15413847 (+)
G141746 NA non-coding upstream 38229 15043773 ~ 15116116 (+)
G141757 LOC108440269 non-coding upstream 58050 15083593 ~ 15096295 (+)
G141753 LOC108440269 non-coding upstream 73196 15079630 ~ 15081149 (+)
G141750 NA non-coding upstream 83836 15067763 ~ 15070509 (+)
G141724 NA non-coding upstream 154020 14963313 ~ 15000325 (+)
G141788 NA non-coding downstream 8890 15218508 ~ 15223310 (+)
G141790 LOC108440271,LOC101884025,LOC107692834,LOC103376102 non-coding downstream 13972 15223590 ~ 15238186 (+)
G141795 NA non-coding downstream 53174 15262792 ~ 15263680 (+)
G141814 NA non-coding downstream 191356 15400974 ~ 15405120 (+)
G141840 NA non-coding downstream 297732 15507350 ~ 15538748 (+)
G141740 LOC108440267 other upstream 97372 15054657 ~ 15056973 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other upstream 369533 14779181 ~ 14784812 (+)
G141495 NA other upstream 624049 14528140 ~ 14530296 (+)
G141410 NA other upstream 953347 14180665 ~ 14200998 (+)
G141361 tcea1 other upstream 1295740 13855603 ~ 13858605 (+)
G141791 NA other downstream 19092 15228710 ~ 15285457 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other downstream 175998 15385616 ~ 15401904 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other downstream 1738764 16948382 ~ 16967950 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other downstream 1762584 16972202 ~ 16985295 (+)
G142093 abcf3 other downstream 1848676 17058294 ~ 17073484 (+)

Expression


Co-expression Network