G142046


Basic Information

Item Value
gene id G142046
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 16809465 ~ 16810152 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU192380
gctccagaaaatagtccgagatgtaggcgtctgttttttaattatatttttattaaaaaaaaaaaaaagaaaataacgaaaactgaaagtgaaactaaactaatttatttataagcgctgttttcactaccgcagttctacagcgggggtgttgtgccgattctgtccgcgaagcgggagtcagattcagcagagagtcggattcggcacaagcgcggcggcacctcgcggtccgcggtgtcagttgtaagctctcgcgctagccgcaaaatacgacagaaaacactgagggagctgcagaattatgaatgggactagaatatgagcacgaggagatcaaagagaaccttcacctgtgagtagctcacatcagaacacgcaaatctctctctctctctctctctctctctctgtgtctctctctctcctctctctctctcctctctctctctctctctctcgcacgtgaactcctccgcgtttgacctgcagcactgtgtttagctgttcttaaaaatcattttaattaaataatagttctatgcctctatgttacagtgtaatttaacataattctgatcatatttcgctcattcaaacagcccgaaaacagccagtcgGAATTTTTGGgaccgatctaacctctaatgctctccccaggcgccgccatgtttacgacgcgccgacg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192380 True 688 lncRNA 0.45 1 16809465 16810152

Neighbor

gene id symbol gene type direction distance location
LOC103044680 NA coding upstream 1309960 15481787 ~ 15499505 (+)
LOC103044992 kcnj10,LOC108440277,LOC107703868,LOC107728032,LOC107692845,LOC102205965 coding upstream 1333250 15443821 ~ 15476215 (+)
trnae-uuc_20 NA coding upstream 1395618 15413776 ~ 15413847 (+)
LOC103043450 LOC103043450 coding upstream 1424559 15379678 ~ 15384906 (+)
LOC103043145 LOC108440275 coding upstream 1430930 15375965 ~ 15378535 (+)
efcab14 efcab14,LOC106569140 coding downstream 117276 16927428 ~ 16940368 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding downstream 184187 16994339 ~ 17004804 (+)
LOC111194332 NA coding downstream 425047 17235199 ~ 17304091 (+)
LOC103034870 NA coding downstream 1943655 18753807 ~ 18785358 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding downstream 1984751 18794903 ~ 18816397 (+)
G142044 NA non-coding upstream 3293 16805097 ~ 16806172 (+)
G142040 NA non-coding upstream 21856 16787078 ~ 16787609 (+)
G141981 NA non-coding upstream 327783 16481479 ~ 16481682 (+)
G141978 NA non-coding upstream 1237652 15571578 ~ 15571813 (+)
G141840 NA non-coding upstream 1270717 15507350 ~ 15538748 (+)
G142047 NA non-coding downstream 5334 16815486 ~ 16815687 (+)
G142060 NA non-coding downstream 75764 16885916 ~ 16886407 (+)
G142065 NA non-coding downstream 87712 16897864 ~ 16898307 (+)
G142072 NA non-coding downstream 153040 16963192 ~ 16963514 (+)
G142079 NA non-coding downstream 196743 17006895 ~ 17061552 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 1407561 15385616 ~ 15401904 (+)
G141791 NA other upstream 1524008 15228710 ~ 15285457 (+)
G141740 LOC108440267 other upstream 1752492 15054657 ~ 15056973 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other upstream 2024653 14779181 ~ 14784812 (+)
G141495 NA other upstream 2279169 14528140 ~ 14530296 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other downstream 138230 16948382 ~ 16967950 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other downstream 162050 16972202 ~ 16985295 (+)
G142093 abcf3 other downstream 248142 17058294 ~ 17073484 (+)
G142166 LOC108436878 other downstream 393070 17203222 ~ 17204493 (+)
G142378 gpaa1 other downstream 2046084 18856236 ~ 18893509 (+)

Expression


Co-expression Network