G142067 (LOC108436873,LOC108267642,LOC105898987)


Basic Information

Item Value
gene id G142067
gene name LOC108436873,LOC108267642,LOC105898987
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 16972202 ~ 16985295 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU192402
TTCCACTCAAgtgagtttatttacagtataaaaaattcACTTGACACTTTTAAAGTCCAGGATGACTGACTACAGAGTATGATACCTAAGGATATAAATCACTAATCATATACATACATCATGAATCCACTCTATTTAAAATGACATACCTTCCGAAAATTGGTATCAAAACATTGAGAAGGGCAAAAAAAGGAttcccaaaacaaaaaaacaatacacttTTGTGGACAATCAACACCATGTCCTGTTCTCTCAGGAATGGTAGTACGGGTGAGAAGACAACTGaacaagacaaaaacaaaacgaCTCATTGCGTTTAGATGACAGTCGGtggaacacttaaaataaacagtatagTTGAGGGGAGGCAGATACAGAGTGACGCCTGGCCAATCTGCTCTTTAACCAAACACTTCCTTCCCTTCTGTAAGGCAAATACATGACAGACGGGGGAAGGGCAACGCAACTATAAGTTAACCTGGATGAGCCAGTCTAAATCAGCACAGGGTGAGACGGAGGATAAGAACATTAAATTCTCAAGTTATTAAAGTAGGATAGATACATAGCCAAGTTGGCGAAAGtaatcacaatatttctcaTTTAATCCATCCAATGTTCATTCAGTAATATTGCCTCAGTCGCTCACATCCATGTCTTGTTCTTCATGGTGGTCGTCACCGTTCTGCTTGGACTGTTTGGGGCTGTGCTTACCCTCACCGTCCTCTGCGTAATGTGTCGGGGAGGAGCCAGAATCCTCAGAATCCTTCATCTCCCGCTCCTTCTCGCTGTCGTAGCCCTGTTCTTCCTCATCATAGTCTCGTGTGACCTTCACATCTCGTTTCTCACTGTCAGACGtccgctctctctccctctccctctccttatctttgctctttttcttcttgCTGGAGGAGCGATCAGAGTCCTCGCGGCTGCGTTCTCGCTCAGACCTCTTGTTATCCCTGTCACGCTCCCGGTCCTTTTCCCTCTCACGATCCCTCTTCTTTTCCTTCTTGTGTCTGTTAGACAAAATGTTTC
>TU192403
TTCCACTCAAgtgagtttatttacagtataaaaaattcACTTGACACTTTTAAAGTCCAGGATGACTGACTACAGAGTATGATACCTAAGGATATAAATCACTAATCATATACATACATCATGAATCCACTCTATTTAAAATGACATACCTTCCGAAAATTGGTATCAAAACATTGAGAAGGGCAAAAAAAGGAttcccaaaacaaaaaaacaatacacttTTGTGGACAATCAACACCATGTCCTGTTCTCTCAGGAATGGTAGTACGGGTGAGAAGACAACTGaacaagacaaaaacaaaacgaCTCATTGCGTTTAGATGACAGTCGGtggaacacttaaaataaacagtatagTTGAGGGGAGGCAGATACAGAGTGACGCCTGGCCAATCTGCTCTTTAACCAAACACTTCCTTCCCTTCTGTAAGGCAAATACATGACAGACGGGGGAAGGGCAACGCAACTATAAGTTAACCTGGATGAGCCAGTCTAAATCAGCACAGGGTGAGACGGAGGATAAGAACATTAAATTCTCAAGTTATTAAAGTAGGATAGATACATAGCCAAGTTGGCGAAAGtaatcacaatatttctcaTTTAATCCATCCAATGTTCATTCAGTAATATTGCCTCAGTCGCTCACATCCATGTCTTGTTCTTCATGGTGGTCGTCACCGTTCTGCTTGGACTGTTTGGGGCTGTGCTTACCCTCACCGTCCTCTGCGTAATGTGTCGGGGAGGAGCCAGAATCCTCAGAATCCTTCATCTCCCGCTCCTTCTCGCTGTCGTAGCCCTGTTCTTCCTCATCATAGTCTCGTGTGACCTTCACATCTCGTTTCTCACTGTCAGACGtccgctctctctccctctccctctccttatctttgctctttttcttcttgCTGGAGGAGCGATCAGAGTCCTCGCGGCTGCGTTCTCGCTCAGACCTCTTGTTATCCCTGTCACGCTCCCGGTCCTTTTCCCTCTCACGATCCCTCTTCTTTTCCTTCTTGTCTTCGTGGTGATGGCGATCTGGATACTTTTCTCTTAGGAGATCTTCGGGGAGACCGGCTAAGACTCTTTCTGCGTCGCCGGCTGGTGCTTCTGGATCTCCTGGCGGTGCTGTAGCTCTTTGGAGGCGTTTTAGAGCGTTTCTtgtctttttcctctttctttctatccCTGGATTTGCTGGTGGAGCGTCGGCCCCTGTCTCTGGAGCGGGACCTCCTCCTTCTAGGACTCCTGGAGCGCCTGCGGCTCCTGGAGCGGGAGCGCCTGCGGGATCTGCTGCTGGACCGCCTATGACGGGAGCGAGAGCGTGATCTCCTTCGTCTGGATCTAGACCTGGACCTGGATCGGGAATGCTTGCGCTTGCTGTCttttttatCTGCAGCCATGGGGTTCAATTTGGGATCCACTGACGACATTAACTTCAGCAGCTGTTCAGCCGAAAGAGCCTGGGGATTCATGCCAGCTCCTGGCATCATGGCAGGACCGCCAAGACCCATTGGGACACCTGCCATCGAAGCTAGAGGGTTTGGTGTTGGTAGCAGTCCTCCACCCGGAAGAAGCCCAGCAACAGCATTGGCAGGAGCCAGCAGAGACAAAGCCTTCGACTCATCCGGAATCACACCTTCTGCATAGGGCACAACTATAAGAGCTCTGTCCACAAACACTGTGTTAGTGAGGTGCTGGGCCACCCCCACAGACTCCTGCTCCTGGAACCGCACAAAGCACACCCGAGACGTCACCGGCATGGTCGAGTCATCTGGAGGGAAGAGCCGGAGCTCCTCGATGGTCCCGAGGAAGCCGAACAGGGTGCGCATCTGCTCGGACGTCGTGCTCGGAGACACGTTGGTCACCTGCACCACGTTCGTGCTGCAGTTCATCTTCAGGCAGGTGGAGACAAACCCAGCGCTTTCAGGACTTTCTCTGCACTCAGATATCCGCCTTTAAACAGCCGCAGGAGATCCGCAAATC
>TU192404
TTaagaaaattaagatttttaaacttttaaaaattgttaaactgtaaaaactgtacTTTAGCCTTACCGAAGCTAGAGGGTTTGGTGTTGGTAGCAGTCCTCCACCCGGAAGAAGCCCAGCAACAGCATTGGCAGGAGCCAGCAGAGACAAAGCCTTCGACTCATCCGGAATCACACCTTCTGCATAGGGCACAACTATAAGAGCTCTGTCCACAAACACTGTGTTAGTGAGGTGCTGGGCCACCCCCACAGACTCCTGCTCCTGGAACCGCACAAAGCACACCCGAGACGTCACCGGCATGGTCGAGTCATCTGGAGGGAAGAGCCGGAGCTCCTCGATGGTCCCGAGGAAGCCGAACAGGGTGCGCATCTGCTCGGACGTCGTGCTCGGAGACACGTTGGTCACCTGCACCACGTTCGTGCTGCAGTTCATCTTCAGGCAGGTGGAGACAAACCCAGCGCTTTCAGGACTTTCTCTGCACTCAGATATCCGCCTTTAAACAGCCGCAGGAGATCCGCAAATC
>TU192405
ggcagGATCTAGcataaataacagaaaaacataCATGTGCAgcaattaaatatgtttaaaaacaaatatgcaaCAGCTGTTAGCTTGTAATGCAAAAGTCACCACCCCTGCTGCTGGAGAGCTACCTTGTAGCAGACTTCAGATCTGCATCAGGGGGAATTGATAAACAGTTGAATCTAATTAATGCCACCAGGAGTGCTTGAGGTTTGTGAGATTTGTGATAGAAGTGTAACCTACAGTTTGATAGTTCATCAGGAGCAGGGTTGGTGACTTCGGTTGCAATGCATAGTAATTTAAGCTTTTAACAAACAGGCCCTCACAGCTGGGCACAGGTCAGCTGCAGGTCACTAACCTGGATTTGCTGGTGGAGCGTCGGCCCCTGTCTCTGGAGCGGGACCTCCTCCTTCTAGGACTCCTGGAGCGCCTGCGGCTCCTGGAGCGGGAGCGCCTGCGGGATCTGCTGCTGGACCGCCTATGACGGGAGCGAGAGCGTGATCTCCTTCGTCTGGATCTAGACCTGGACCTGGATCGGGAATGCTTGCGCTTGCTGTCtttttTCCCAGGCTCTATAGCAGCAGAGATCAGAGACTGGGCCTCTCTGACTCTTTTCATAGCCTCCTCAATCTCCTTGTTAGAAGTATCTGCCTTCAGGGCCATACCTGCAGCCATGGGGTTCAATTTGGGATCCACTGACGACATTAACTTCAGCAGCTGTTCAGCCGAAAGAGCCTGGGGATTCATGCCAGCTCCTGGCATCATGGCAGGACCGCCAAGACCCATTGGGACACCTGCCATCGAAGCTAGAGGGTTTGGTGTTGGTAGCAGTCCTCCACCCGGAAGAAGCCCAGCAACAGCATTGGCAGGAGCCAGCAGAGACAAAGCCTTCGACTCATCCGGAATCACACCTTCTGCATAGGGCACAACTATAAGAGCTCTGTCCACAAACACTGTGTTAGTGAGGTGCTGGGCCACCCCCACAGACTCCTGCTCCTGGAACCGCACAAAGCACACCCGAGACGTCACCGGCATGGTCGAGTCATCTGGAGGGAAGAGCCGGAGCTCCTCGATGGTCCCGAGGAAGCCGAACAGGGTGCGCATCTGCTCGGACGTCGTGCTCGGAGACACGTTGGTCACCTGCACCACGTTCGTGCTGCAGTTCATCTTCAGGCAGGTGGAGACAAACCCAGCGCTTTCAGGACTTTCTCTGCACTCAGATATCCGCCTTTAAACAGCCGCAGGAGATCCGCAAATC

Function

NR:

description
PREDICTED: serine/arginine-rich splicing factor 11-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192402 False 1038 TUCP 0.43 2 16972202 16973930
TU192403 True 1986 TUCP 0.50 12 16972202 16985295
TU192404 False 524 lncRNA 0.52 3 16979995 16985295
TU192405 False 1252 lncRNA 0.53 8 16976262 16985295

Neighbor

gene id symbol gene type direction distance location
efcab14 efcab14,LOC106569140 coding upstream 31834 16927428 ~ 16940368 (+)
LOC103044680 NA coding upstream 1472697 15481787 ~ 15499505 (+)
LOC103044992 kcnj10,LOC108440277,LOC107703868,LOC107728032,LOC107692845,LOC102205965 coding upstream 1495987 15443821 ~ 15476215 (+)
trnae-uuc_20 NA coding upstream 1558355 15413776 ~ 15413847 (+)
LOC103043450 LOC103043450 coding upstream 1587296 15379678 ~ 15384906 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding downstream 9044 16994339 ~ 17004804 (+)
LOC111194332 NA coding downstream 249904 17235199 ~ 17304091 (+)
LOC103034870 NA coding downstream 1768512 18753807 ~ 18785358 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding downstream 1809608 18794903 ~ 18816397 (+)
exosc4 exosc4,exos4 coding downstream 1836123 18821418 ~ 18826143 (+)
G142072 NA non-coding upstream 8688 16963192 ~ 16963514 (+)
G142065 NA non-coding upstream 73895 16897864 ~ 16898307 (+)
G142060 NA non-coding upstream 85795 16885916 ~ 16886407 (+)
G142047 NA non-coding upstream 156515 16815486 ~ 16815687 (+)
G142046 NA non-coding upstream 162050 16809465 ~ 16810152 (+)
G142079 NA non-coding downstream 21600 17006895 ~ 17061552 (+)
G142082 NA non-coding downstream 27806 17013101 ~ 17014834 (+)
G142091 abcf3 non-coding downstream 63155 17048450 ~ 17049952 (+)
G142119 NA non-coding downstream 159347 17144642 ~ 17145074 (+)
G142168 NA non-coding downstream 221164 17206459 ~ 17208182 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other upstream 4252 16948382 ~ 16967950 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 1570298 15385616 ~ 15401904 (+)
G141791 NA other upstream 1686745 15228710 ~ 15285457 (+)
G141740 LOC108440267 other upstream 1915229 15054657 ~ 15056973 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other upstream 2187390 14779181 ~ 14784812 (+)
G142093 abcf3 other downstream 72999 17058294 ~ 17073484 (+)
G142166 LOC108436878 other downstream 217927 17203222 ~ 17204493 (+)
G142378 gpaa1 other downstream 1870941 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other downstream 1880155 18865450 ~ 18870317 (+)
G142620 NA other downstream 2751011 19736306 ~ 19868292 (+)

Expression


Co-expression Network