G142093 (abcf3)


Basic Information

Item Value
gene id G142093
gene name abcf3
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 17058294 ~ 17073484 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU192434
GTTCCATTGGCAATGTGGGCATTGAGCTTGCGCTCCTCGGTGAGCAGCTCCTCTCGGACCGTGTCGCTCTCCAGGACGCTCTGGAGGGCCGGAGTGTCGTCTCCTGCCACTTCCTGCTCCACGTGCAGGATGGAGATGTGCGCAGGCACGCGGAGGCTGCGGCTGGCCAGCATCTTCAGCAGCGTGGTCTTTCCCAGACCGTTACGTCCCACCAGGCCGTACCTGCGGCCGCTTGCCAAACACAGCTCCGCCCCCTGCAGCAGAGATCTCTCTCCAAATGATACGTCAAAGTTTTCTATGCGGATATCATAACTGCGATTCTTCCCGGACATGTCCACCCGACTCTCCTTCTTACTGCTAGCCTGGCTGGCAGAAGCCTCCTCCAAGACCAGTGGGTTTGAGGGTTTCTGGGAGTCCTTTTCATTTCTCCGCTCATGCTTTGCCCTCAGTTTGGCCTCCGCCTTCTCCAACTTCTTGGCATCTACAGTCGTACTCTGATTTCTCTTGACCATCCAAATGCCCTGCACATCATTAGTAGCTGATCCAGCAGAATCCACAGAGATTTGAGACAGCTGAACTGGAGCATCCAGCAACACCTGCCTCGGGTTTGAGTTGCAGTTAGACAACTTAAGTGTATTAAACAACTGGAGACAGATATCTCGGACGTCGTCCTCGTTTTTCTCAGCAGCTACTTCCTGGAGAACCCCACCAATGGCCTCGAACACTTCCTCTCCATCTTCAAAATCAGAACCACCACTGTCTAGCACTCCGGTGATATAGTCAAACACTTCGGTGTCAATTTCGGGGAACTCGCTTTTCAGGATGTCCACGTAAGTCGCCATGATACGAACAGACACACCGGCCCCTGCTGCCGAGGAGCTTCACTCAGCTGCGTTCCGTCACCGCGGTGCAgcatgggaaatgtagttttaccGACTTAGCAGAGGAGCCAACTGAACTAGCACCAGCTAAAAGTCAC

Function

symbol description
abcf3 Predicted to enable ATP binding activity. Orthologous to human ABCF3 (ATP binding cassette subfamily F member 3).

NR:

description
PREDICTED: palmitoyltransferase ZDHHC3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192434 True 979 TUCP 0.54 7 17058294 17073484

Neighbor

gene id symbol gene type direction distance location
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 53490 16994339 ~ 17004804 (+)
efcab14 efcab14,LOC106569140 coding upstream 117926 16927428 ~ 16940368 (+)
LOC103044680 NA coding upstream 1558789 15481787 ~ 15499505 (+)
LOC103044992 kcnj10,LOC108440277,LOC107703868,LOC107728032,LOC107692845,LOC102205965 coding upstream 1582079 15443821 ~ 15476215 (+)
trnae-uuc_20 NA coding upstream 1644447 15413776 ~ 15413847 (+)
LOC111194332 NA coding downstream 161715 17235199 ~ 17304091 (+)
LOC103034870 NA coding downstream 1680323 18753807 ~ 18785358 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding downstream 1721419 18794903 ~ 18816397 (+)
exosc4 exosc4,exos4 coding downstream 1747934 18821418 ~ 18826143 (+)
LOC111188235 NA coding downstream 1857395 18930879 ~ 18932145 (+)
G142091 abcf3 non-coding upstream 8342 17048450 ~ 17049952 (+)
G142082 NA non-coding upstream 43460 17013101 ~ 17014834 (+)
G142072 NA non-coding upstream 94780 16963192 ~ 16963514 (+)
G142065 NA non-coding upstream 159987 16897864 ~ 16898307 (+)
G142060 NA non-coding upstream 171887 16885916 ~ 16886407 (+)
G142119 NA non-coding downstream 71158 17144642 ~ 17145074 (+)
G142168 NA non-coding downstream 132975 17206459 ~ 17208182 (+)
G142222 NA non-coding downstream 923690 17997174 ~ 18001176 (+)
G142220 NA non-coding downstream 948762 18022246 ~ 18024672 (+)
G142228 ss18 non-coding downstream 962304 18035788 ~ 18037584 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 72999 16972202 ~ 16985295 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other upstream 90344 16948382 ~ 16967950 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 1656390 15385616 ~ 15401904 (+)
G141791 NA other upstream 1772837 15228710 ~ 15285457 (+)
G141740 LOC108440267 other upstream 2001321 15054657 ~ 15056973 (+)
G142166 LOC108436878 other downstream 129738 17203222 ~ 17204493 (+)
G142378 gpaa1 other downstream 1782752 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other downstream 1791966 18865450 ~ 18870317 (+)
G142620 NA other downstream 2662822 19736306 ~ 19868292 (+)
rnf138 NA other downstream 3129164 20202648 ~ 20220149 (+)

Expression


Co-expression Network