G142166 (LOC108436878)


Basic Information

Item Value
gene id G142166
gene name LOC108436878
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 17203222 ~ 17204493 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU192525
CTCACCTTCACACCTGTTCCCACTCCAGATCCCACACAGTGCGAAACAACGGAGCGTTAGAAAAAGCGTACAGAAACGTAgcgtaaaaaaaatttaaatacgtGAACATGAAAGGATATGGCCACTCTATGATCCTTCTCGCGTACTTTCTGATGATGTTGTTCTCGGCGAAAATGAAGAGCGACCTGTTGACGGTGAGGCAGTTGTGTCTGGCCGGGATTGGGTTGTAAAGGGCCATGGTCCGAGCGCGCTGAGCTTTGGCTTGCTTGGACTCCCCGGCGGTCGCCTCGGCGCCGTCGCCCTCCGCGCCCATCTCTCGAGGCGCGTCGCCTTCAGGCTGGGCCATGTCTGGAGACACGGGAACAACGCACGCGCGGGAATGCAGAACACTGGAGCACGAGCAGCGACCACAACAGAAAATAAACGTCCCACTTTCACTCCATTCCAAGGGGAACTTCTCGGGGATGGTTGGGGTAGACGATGCTCCGTGTTTTTGGCGCTTACATTCCACCAACTTTTGGCTTTTAGGAAAGTTCACCTACTCGTGGATGAAGCTGGTGGATCGATTCCTGGAATATGTAGCGCGTGGAACAGCGTGGACGTGGAGCATGCATCTCCAAACGGATCGTCTTCTTGGACActtgaaaacttgaaaaaaaatgttttactcaCTTCGTCCAAACaccaaaagcacaaaaaataccaaaaataccAAAAGTAGCAAAAGTAACAACGGTCTCAAAAGTAGAAGTACCAGACGCCAGAGCTTCTCCAACGTGTTCCCTCAGCTTTTCTTCCTCCACTTTCTCCGAACTCCCTCCACTAATCCCGCCGAACCTCATACCAGCGCATCACTTGGACCGTAGGTTCCGTTCCCTCCATCCCATCAGAGCGCGCGCATCCCGCGTGCGCTAAAGTCGAGCTCTGAAGCGGTTCGGTTCTTCTAGCTGAGGAAACGCAAGAGCGAATGCAAGAAGAGCAGCAAAGCAGGAGCGCGCGCGTGCGAGAAGGAAGGAGGCAGTGCTGGAGGagaaatcatcatcatcaccatcatcatcatcatcatcatcactagcAGCAGCTCAGAGATCCTTCAACACTCCTCCTCTtcccctcctccacctcctcctcctgctaTACCCcctccatcaccaccatcaccatcacatcACCACTCCACCACTCcaccaccatccatccatccactaccTTCTCCCACGGATTTCAGCTCAgcaattcatttatttcccccAGGCACATCGGGACACAGGA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: voltage-dependent R-type calcium channel subunit alpha-1E-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192525 True 1272 TUCP 0.52 1 17203222 17204493

Neighbor

gene id symbol gene type direction distance location
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 198418 16994339 ~ 17004804 (+)
efcab14 efcab14,LOC106569140 coding upstream 262854 16927428 ~ 16940368 (+)
LOC103044680 NA coding upstream 1703717 15481787 ~ 15499505 (+)
LOC103044992 kcnj10,LOC108440277,LOC107703868,LOC107728032,LOC107692845,LOC102205965 coding upstream 1727007 15443821 ~ 15476215 (+)
trnae-uuc_20 NA coding upstream 1789375 15413776 ~ 15413847 (+)
LOC111194332 NA coding downstream 30706 17235199 ~ 17304091 (+)
LOC103034870 NA coding downstream 1549314 18753807 ~ 18785358 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding downstream 1590410 18794903 ~ 18816397 (+)
exosc4 exosc4,exos4 coding downstream 1616925 18821418 ~ 18826143 (+)
LOC111188235 NA coding downstream 1726386 18930879 ~ 18932145 (+)
G142119 NA non-coding upstream 58148 17144642 ~ 17145074 (+)
G142079 NA non-coding upstream 141670 17006895 ~ 17061552 (+)
G142091 abcf3 non-coding upstream 153270 17048450 ~ 17049952 (+)
G142082 NA non-coding upstream 188388 17013101 ~ 17014834 (+)
G142072 NA non-coding upstream 239708 16963192 ~ 16963514 (+)
G142168 NA non-coding downstream 1966 17206459 ~ 17208182 (+)
G142222 NA non-coding downstream 792681 17997174 ~ 18001176 (+)
G142220 NA non-coding downstream 817753 18022246 ~ 18024672 (+)
G142228 ss18 non-coding downstream 831295 18035788 ~ 18037584 (+)
LOC111194204 NA non-coding downstream 856524 18061017 ~ 18062315 (+)
G142093 abcf3 other upstream 129738 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 217927 16972202 ~ 16985295 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other upstream 235272 16948382 ~ 16967950 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 1801318 15385616 ~ 15401904 (+)
G141791 NA other upstream 1917765 15228710 ~ 15285457 (+)
G142378 gpaa1 other downstream 1651743 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other downstream 1660957 18865450 ~ 18870317 (+)
G142620 NA other downstream 2531813 19736306 ~ 19868292 (+)
rnf138 NA other downstream 2998155 20202648 ~ 20220149 (+)
G142820 NA other downstream 3578090 20782583 ~ 20790122 (+)

Expression


Co-expression Network