G142220


Basic Information

Item Value
gene id G142220
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18022246 ~ 18024672 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU192598
aatttattCAGCTGTTTTGTTCAATTACCGATGTACAACTTTACACTGTCGCGAAAACAGACACAGACATGGCACCATTAAGTTGCATCATGATACGAGAGCACCAAATGAATGTTTCTCATCAGCACAAACGTCCTCATACATTCTGAGCTGGAAACCCCACCCCTCCCTACCCTCAGAGGGaggaacaaaaacacaacagaagaaAGAGGAAAATAATTACACTAATTACAGATGAAGTTACAGGTGCTGGCTTTATACTTAATTCTTAATTGTACATGCTCTGAAATACACATcataattttacatacattaaaaaaaaaaactacagtcaGTACCTGATTTAAAAccttacaaaaataataaaggtgTGCTTTTGGGCAGGGAAGAGACGTTTAACAACAACAATTTAGACTCAAGTTTTGATCGAATGATATCTATTaagtataataatttatttatgaaatattgGGTCAAGAGCTGAACACTGCAAAATAAAAGATGTCCTTTAAACACACTAGGTGTGGCTTTAATGTGAGAAACCCAAATTAAACAACCACCACCCAAATTCACATTAGCAGACATTTTATATGTAGACACAATCACATAAAAAATTTGCTTCTCCAGaatgaaaagagaagaaaaagacaaCCACATTCAAATCAATGGTATTATATTATAGAAGGTACTTAGGCTACGTTCATACAGCAGGTAAAGTGGCACAAATCCCTTTCCGACATTTTTTTCACATGTAAATACTATCTCAAATGTGAGAGAACGCTGAATCTGATATATGGGCCAGTATCCTGTTATTGAAATTTGTTACTTTCAAGTTAATCTAACTCAACACTGTCTGAGAAGAAAGTAAAATGGACAACAGAAGTGAGGAAGAGTTTCAGTGGTGTAATAGAGAAGAAACAGAACTATAATATTTAAGGTTTGTTTATGCTTCTGTGTTAAGCCAACACATCGCTTATGGTGTAGCCTGTACaattgtgcacatttatacttcTGGATCTGCATGTCCATGACTCTGCACGCTCCTTTAAACAATGAGAGCGAGAATGTGTGGGCGGGTACACAAGGCTtggcggaccaatcacagtaGTGCTGCCCACGTCACGCAATTACATTTCTGGGGAGGTGCGCATCAATGGCATAGGGTATGTGTAGGTTCAACGCACAAATATAATTCAGCCTTTTAGGTGATTTTTTAGTTCAAAATAAACTAGAAattgtatattctatttatttatttatttattttaaagaaacttaaCCACAGAATGTAGTGGCTGTAGTATCAAAGAAACAAAGCTTTGATAGCAACTTTTAATACATTCTTGGTGATAAACCGAGCTGTCAGCCACTGGAACTCAAAAGGCTTTTCATGCTGAAGAAGATAAAATTGATAATTCATATGAGGCACTGATCTTTTGCATATGCGCATGAGTTTAGGAGAGTAATATATAGTCTACATTAATAGGAGTGTAAACCACCTGAAAAAACACTGGATTAGGTGAGAAATTCTGATACACCACTTGACCTGCTGTATGAATGCTGCAGCATCAGACTGTTAATTGTCTGTCCAGCCGATCCCAGTCACATACATAGCCTGGGACCAAGATTTCTTGTATAATGGAATGCTTAACAATGGCTTTACATGGTTTTCCACATTAATAATGCCAACTTTGCCAGAATAATTTTGCAGCCGCACTTATATACTGATAGAATATTAATGAAACaccaacatatttatttttttctaaacataaaaacaagaaaaaaatttacaaattaacacattttatttaaacctctGTTCTGTTACAGTCCGGTAATCTTCACATTCATTatttaacaacaacaacaaaaagtgtCATCGGCAAAAAACACAGCTGGTGAAGGCGGAGTCCCAAGCCCTGTACTCCTTCGTAACTCAGTTCTATTACCCCAATTTGAATGCGACTCCTGACTGTCCACTCTTGGggaaatttcaaatgtacagcCGAGTCGTTACACTTAAAACGAAGTGGCCCCCAGTGGACAATCGACATGCAAGCCACTAGAGTAGCAGATGGGTTTAATCAAGGTTCAGCATGGTGGGTAAGAACCTAAGACATTACACTACAGAGGGGACAACATTTtgtgtggggaaaaaaacacaaaaaacacaaaaataaccaatataaacacatttagcaaaacaaaaagtACAATACTTAGAGctacgttttttttctccaaatccTCAGTACAAAGTAAGCTCTATCTGGAAAgcataaaatacatttgtacatcATGACATAACTTTGACCTTGACATTTAAGAAGAATATTCCCTGTGCAAGATCAACTCTTGGCCCCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192598 True 2368 lncRNA 0.36 2 18022246 18024672

Neighbor

gene id symbol gene type direction distance location
LOC111194332 NA coding upstream 718155 17235199 ~ 17304091 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 1017442 16994339 ~ 17004804 (+)
efcab14 efcab14,LOC106569140 coding upstream 1081878 16927428 ~ 16940368 (+)
LOC103044680 NA coding upstream 2522741 15481787 ~ 15499505 (+)
LOC103044992 kcnj10,LOC108440277,LOC107703868,LOC107728032,LOC107692845,LOC102205965 coding upstream 2546031 15443821 ~ 15476215 (+)
LOC103034870 NA coding downstream 729135 18753807 ~ 18785358 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding downstream 770231 18794903 ~ 18816397 (+)
exosc4 exosc4,exos4 coding downstream 796746 18821418 ~ 18826143 (+)
LOC111188235 NA coding downstream 906207 18930879 ~ 18932145 (+)
LOC103047721 NA coding downstream 945214 18969886 ~ 18987441 (+)
G142222 NA non-coding upstream 21070 17997174 ~ 18001176 (+)
G142168 NA non-coding upstream 814064 17206459 ~ 17208182 (+)
G142119 NA non-coding upstream 877172 17144642 ~ 17145074 (+)
G142079 NA non-coding upstream 960694 17006895 ~ 17061552 (+)
G142228 ss18 non-coding downstream 11116 18035788 ~ 18037584 (+)
LOC111194204 NA non-coding downstream 36345 18061017 ~ 18062315 (+)
G142283 NA non-coding downstream 124224 18148896 ~ 18149113 (+)
G142298 NA non-coding downstream 139645 18164317 ~ 18166497 (+)
G142299 NA non-coding downstream 141876 18166548 ~ 18166852 (+)
G142166 LOC108436878 other upstream 817753 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 948762 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 1036951 16972202 ~ 16985295 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other upstream 1054296 16948382 ~ 16967950 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 2620342 15385616 ~ 15401904 (+)
G142378 gpaa1 other downstream 831564 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other downstream 840778 18865450 ~ 18870317 (+)
G142620 NA other downstream 1711634 19736306 ~ 19868292 (+)
rnf138 NA other downstream 2177976 20202648 ~ 20220149 (+)
G142820 NA other downstream 2757911 20782583 ~ 20790122 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G60830 NA non-coding NC_047598.1 CM018544.1 7495402 ~ 7500703 (-)