G142228 (ss18)


Basic Information

Item Value
gene id G142228
gene name ss18
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18035788 ~ 18037584 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU192607
CCTCCATGACTGTACTGTTCTCCATAGTAGTCCTCCTGGCCTGGATACTGCTGTGGAGGCCcTTGCTGAGGTGGCCTGTATGGAGGCATGGGCCTCTGGCCCATCACATGGTTACCCTGGCCCATCATGCCCATTGGATTCTGCTGACCCTGGTAATGTTGCCCTCCACCACCAGGAGGCATATTATACTGCTGAGAGGGAGGCTGCTGGTGCATTATAGGACCTTGGTTGGGCTGCATGTTCATGCTGGGTCTGGGACCATAGCTGGCCATTGGCTGTCCCTGGCTCATGTTCATCTGTCCCTGGCTGGGGATGCCCTGTGAAGCGGGTACGGTGTGATTGTAGGCCCCCATGGAGCCATGGCTGCTGGGAGGTATGTTCATGGAGCCGCTCTGCATGTTGGGTGGCTGGTTAGGACCAGGGCCCTGCATGGGCATGTGGTTGGGGCCTGCAGAGAAACCATACAGGGTTTTACAATATAATGAGACACTTTATGTAAAGCAAGTTTTAAAAGCA

Function

symbol description
ss18 Predicted to enable transcription coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in synovial sarcoma. Orthologous to human SS18 (SS18 subunit of BAF chromatin remodeling complex).

NR:

description
PREDICTED: protein SSXT isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192607 True 516 lncRNA 0.55 3 18035788 18037584

Neighbor

gene id symbol gene type direction distance location
LOC111194332 NA coding upstream 731697 17235199 ~ 17304091 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 1030984 16994339 ~ 17004804 (+)
efcab14 efcab14,LOC106569140 coding upstream 1095420 16927428 ~ 16940368 (+)
LOC103044680 NA coding upstream 2536283 15481787 ~ 15499505 (+)
LOC103044992 kcnj10,LOC108440277,LOC107703868,LOC107728032,LOC107692845,LOC102205965 coding upstream 2559573 15443821 ~ 15476215 (+)
LOC103034870 NA coding downstream 716223 18753807 ~ 18785358 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding downstream 757319 18794903 ~ 18816397 (+)
exosc4 exosc4,exos4 coding downstream 783834 18821418 ~ 18826143 (+)
LOC111188235 NA coding downstream 893295 18930879 ~ 18932145 (+)
LOC103047721 NA coding downstream 932302 18969886 ~ 18987441 (+)
G142220 NA non-coding upstream 11116 18022246 ~ 18024672 (+)
G142222 NA non-coding upstream 34612 17997174 ~ 18001176 (+)
G142168 NA non-coding upstream 827606 17206459 ~ 17208182 (+)
G142119 NA non-coding upstream 890714 17144642 ~ 17145074 (+)
G142091 abcf3 non-coding upstream 985836 17048450 ~ 17049952 (+)
LOC111194204 NA non-coding downstream 23433 18061017 ~ 18062315 (+)
G142283 NA non-coding downstream 111312 18148896 ~ 18149113 (+)
G142298 NA non-coding downstream 126733 18164317 ~ 18166497 (+)
G142299 NA non-coding downstream 128964 18166548 ~ 18166852 (+)
G142307 -,cdh2,LOC107746014,LOC107571545,LOC108416271 non-coding downstream 278209 18315793 ~ 18317906 (+)
G142166 LOC108436878 other upstream 831295 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 962304 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 1050493 16972202 ~ 16985295 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other upstream 1067838 16948382 ~ 16967950 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 2633884 15385616 ~ 15401904 (+)
G142378 gpaa1 other downstream 818652 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other downstream 827866 18865450 ~ 18870317 (+)
G142620 NA other downstream 1698722 19736306 ~ 19868292 (+)
rnf138 NA other downstream 2165064 20202648 ~ 20220149 (+)
G142820 NA other downstream 2744999 20782583 ~ 20790122 (+)

Expression


Co-expression Network