G142359


Basic Information

Item Value
gene id G142359
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18709438 ~ 18712415 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU192757
ctttgcacactcttgacatcattctctcaatgagcttcaagaggtggccacctgaaatgaaaagttttccaacagtcttgaaggaaggaaggagttcccagaggtgtttattagcacttgttgcccctttgccttcttcactctgtgctccagctcaccccaaaccatctggattgggttcaggtccggtgactgtggaggttcagctcattttttgttaagtacataaaactccacatgtgttcattcatagttttgatgccttcagtgagaatctacaatgtaaatagtcatgaaaat
>TU192758
ctttgcacactcttgacatcattctctcaatgagcttcaagaggtggccacctgaaatgaaaagttttccaacagtcttgaaggaaggaaggagttcccagaggtgtttattagcacttgttgctcctttgccttcttcactctgtgctccagctcaccccaaaccatctggattgggttcaggtccggtgactgtggaggttcagctcattttttgttaagtacataaaactccacatgtgttcattcatagttttgatgccttcagtgagaatctacaatgtaaatagtcatgaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192757 True 300 lncRNA 0.43 2 18709438 18712415
TU192758 False 300 lncRNA 0.42 2 18709438 18712415

Neighbor

gene id symbol gene type direction distance location
LOC111194332 NA coding upstream 1405347 17235199 ~ 17304091 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 1704634 16994339 ~ 17004804 (+)
efcab14 efcab14,LOC106569140 coding upstream 1769070 16927428 ~ 16940368 (+)
LOC103044680 NA coding upstream 3209933 15481787 ~ 15499505 (+)
LOC103044992 kcnj10,LOC108440277,LOC107703868,LOC107728032,LOC107692845,LOC102205965 coding upstream 3233223 15443821 ~ 15476215 (+)
LOC103034870 NA coding downstream 41392 18753807 ~ 18785358 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding downstream 82488 18794903 ~ 18816397 (+)
exosc4 exosc4,exos4 coding downstream 109003 18821418 ~ 18826143 (+)
LOC111188235 NA coding downstream 218464 18930879 ~ 18932145 (+)
LOC103047721 NA coding downstream 257471 18969886 ~ 18987441 (+)
G142344 NA non-coding upstream 18479 18615188 ~ 18690959 (+)
G142348 NA non-coding upstream 75028 18633047 ~ 18634410 (+)
G142342 NA non-coding upstream 100928 18606788 ~ 18608510 (+)
G142338 NA non-coding upstream 124541 18584568 ~ 18584897 (+)
G142337 NA non-coding upstream 125676 18583544 ~ 18583762 (+)
G142360 NA non-coding downstream 3164 18715579 ~ 18715796 (+)
G142365 NA non-coding downstream 51643 18764058 ~ 18765703 (+)
G142368 NA non-coding downstream 96462 18808877 ~ 18809481 (+)
G142369 NA non-coding downstream 100563 18812978 ~ 18813382 (+)
G142372 NA non-coding downstream 114713 18827128 ~ 18827985 (+)
G142166 LOC108436878 other upstream 1504945 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 1635954 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 1724143 16972202 ~ 16985295 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other upstream 1741488 16948382 ~ 16967950 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 3307534 15385616 ~ 15401904 (+)
G142378 gpaa1 other downstream 143821 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other downstream 153035 18865450 ~ 18870317 (+)
G142620 NA other downstream 1023891 19736306 ~ 19868292 (+)
rnf138 NA other downstream 1490233 20202648 ~ 20220149 (+)
G142820 NA other downstream 2070168 20782583 ~ 20790122 (+)

Expression


Co-expression Network