G142371


Basic Information

Item Value
gene id G142371
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18828347 ~ 18831508 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU192776
aacgttacactgacctgATGTAACTGTCAAATTAATTcttcatattaaatatttaaattaattctaAGTTGTGTGTTCCTCATAATGATTACAACATTAGTACAAAGcttcactgtccaatgaaaaacaactatctccatttttgtcgatttttagtttattacataatttgaacagacaaactgtctcttacactgttcCAACATTtgcttgatgaacggaccaatagaaatacttttaaatgacctgaaataaactctttttatattgactcccattgaaagtttagaaggttcttttctctctcctgtaaagttgctgttttggagatactcatttttcattggacagtgacaaaaGACAGATtggtttattaaattaaatgctgGAAATCAGATGAAAtgctttttccctttttttatctgaataaTCAACTAATTAGCCGAAAACAAAACGGACAGATGAATTATtcatcaaaataatcattagttacaGAACTAATTgagatactgtaagcaagatcatatattgtggttattttaattaacatttttaaataatttgtctAAAAATACaccatgatattttttttttaatctgagtaaaaatatatatttttttacttttacacaatCATAACCGTTAGATCTAATGGCCGAGTACAATGCTGCTAttaagtgggcggggcttaaacACAAACCACTTATTCTTAACTCAACACAACTGTTATAtgtaataaacatctatttaaaGAAGGCAACAAAATACATAGTACTGAGTACTGATAGTAAACATCTGTAATCGATACCCAGCCCTGActtataattaaacattaaattaaaataagggaaaaaaaacacatctaaaaCACTAAAGAGAATGAAATTATTGGATTAATTTGTAGCTCTTAATATGGTAATAATATTCCAATCATGTTAAaatcatataataatttaatatggtATTAccaattactttattaaatgattgggaataatgttttacattaatgATCAAGACCATGTATTCAattatagatatattattaGAAATGCCAAAAGTCAAGAGATAGCAGTCTGTTACAACGATTAAAacaaagtgttacctcaggggatggcttgggagagctcacccacacctgtataggttgtgaggtgttatcttgtgagtgaggcagGCCTtttcctcgatccacagtgtctCATGTGCACCAGGAATACTGTACCCATCACATTAGATTACACtaacattaccacccacagtggacagagctgtacagtgggtggtaatgatggcgACCGGCGGTggctggctagaactgtccacgTGATCAGACAAGCGACTCCACATGTGTATCCCGCAACATTCTTTTCACTTCtttgggacatggcaaaagtcacgggactcAAGACACTACATTTGAAGGTCATCAATACATGTCAATACATTCTGTGTTATTACTAGAAATGATTGGAAAATTATTACAACATTAAATGCTACATATactgccagtcaaaagtttggacacacccgactcatttaatttttttttttattgtaaatttaatattaaagactataatgatcaaagctatacaggaaaacatgctaaattattctgtaaatctttttttttaaaacaaaccagaatatttgaagttttatcctttagattcttctaaaaatagcacatttatctttgaggacagatctgcacactcttggtgagattttcatctcagtatcttcatgagggagagtcacctggaatagttttctcagcgtcttgaaggaaggagttcctggaggtgctgaacaatagttgctgcttttccttcactttgctgtgaagctccagctcatcccaaaatcACCGCAAATCTTAAATTACTAAATCAATgatatatgtgtcccttaactgttttcatgtcttCAATATGAATCCACTAtgtagaaaatattttaaataaataaaaaaagaaaaacaacacattgaatgagaagacgtgtccaaacgtttgactggtgctgtatgtCGGGTTGTAGAATTGCTAAGATTTTAGTAGGATTTTGTATTGGAGAATCATGTCATGAACAATGCTGCTATTGTTTCAAAGCTTTTTAAcagatgcatgtttttttgtgtgtttttattcggAAAGCTCTCGCATGCATTAGTAACGAGaaacaaaatgcatcagcaaTTCTAGATGAGTAAAAATCCTACGAAAATCTCAGTGCATTTCATAAAATGAGACAGTAATAACGACAGTAATAAGCATCTGAGTGTCAGTCTGCACGTGAAGAagatccttgcagacctgcaaTGAGTGTATTTACAGTTGAAATAAGGGAAATCTTCCTGTATAGCTGTTGATTAAAAGAGGTTAAATCTGCTGAGTTGCTTGTAGGAACTTTGCACCCTGATGCCACCAACGAACGGTCAGCACAATATGTCCATCCTCACGTTCCGTATGTACCAGTGCATCttaagaaaattagaatatcattgagaaGGTACTTAATTTCAATAATTCCGttcaaaaagtgaaactcatattatatagatgtattacacagagtgatctattttaagcatttatttattattttattgttggtaCAATTGCCAAATTGGTAcaatttggcagtgtgggcagtgtgccaagtcctgctgaaaaatgaaagccGAAGCATGAAGAGCTtgtgtaagattttgtgggaaaacaaaactgcactgactttagacttgataataaaacacagtggaccaacaccagcagatgacacgtctctccaaaccatcactgatcatcagtaaattttacatttcattaataaaaatcaagggagcagagtctggaggaagagtggagagacacacagtccaagctgctcgaggtctagtgcgaagtttccaccaatcagtgatggtttagagagacatgtctcaatctgctggtgttggtcccaAGTCAGTGCAGGGTTTTCCTGGAAATTGAAATTcctgcggatttcattttccagcaggatttggcacacagcccacactgccaaaagtaccaattggtcttatataatattctaattttcagagacactgaaaattagaaaaaaatattaaataaataaacgcttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192776 True 3140 lncRNA 0.34 2 18828347 18831508

Neighbor

gene id symbol gene type direction distance location
exosc4 exosc4,exos4 coding upstream 2204 18821418 ~ 18826143 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding upstream 11950 18794903 ~ 18816397 (+)
LOC103034870 NA coding upstream 42989 18753807 ~ 18785358 (+)
LOC111194332 NA coding upstream 1524256 17235199 ~ 17304091 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 1823543 16994339 ~ 17004804 (+)
LOC111188235 NA coding downstream 99371 18930879 ~ 18932145 (+)
LOC103047721 NA coding downstream 138378 18969886 ~ 18987441 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding downstream 263258 19094766 ~ 19119530 (+)
LOC111194335 NA coding downstream 594486 19425994 ~ 19431174 (+)
ripk1 NA coding downstream 1256788 20088296 ~ 20115213 (+)
G142372 NA non-coding upstream 362 18827128 ~ 18827985 (+)
G142369 NA non-coding upstream 14965 18812978 ~ 18813382 (+)
G142368 NA non-coding upstream 18866 18808877 ~ 18809481 (+)
G142365 NA non-coding upstream 62644 18764058 ~ 18765703 (+)
G142360 NA non-coding upstream 112551 18715579 ~ 18715796 (+)
G142377 NA non-coding downstream 21892 18853400 ~ 18854020 (+)
G142380 NA non-coding downstream 28843 18860351 ~ 18860741 (+)
G142382 NA non-coding downstream 32683 18864191 ~ 18870899 (+)
G142385 NA non-coding downstream 34799 18866307 ~ 18895007 (+)
LOC103030232 NA non-coding downstream 92485 18923993 ~ 18930488 (+)
G142166 LOC108436878 other upstream 1623854 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 1754863 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 1843052 16972202 ~ 16985295 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other upstream 1860397 16948382 ~ 16967950 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 3426443 15385616 ~ 15401904 (+)
G142378 gpaa1 other downstream 24728 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other downstream 33942 18865450 ~ 18870317 (+)
G142620 NA other downstream 904798 19736306 ~ 19868292 (+)
rnf138 NA other downstream 1371140 20202648 ~ 20220149 (+)
G142820 NA other downstream 1951075 20782583 ~ 20790122 (+)

Expression


Co-expression Network