G142372


Basic Information

Item Value
gene id G142372
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18827128 ~ 18827985 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU192777
ATCCAGTaacatttattctgtttaattataatgatataacaaataaaataaaagcacttGCAAATTACCCTGTACCTGGATGacagaaataaactaaactaaactgatcCAGGGTGTGTTAGAACAGTGATGACGTGTCTCCTGAATGTCATTAACAGAGAGAAGGATCAGAAGCCGCTGTGACTGTAGACTCTTTAGACACTATAGACTCTTTATAGACTCTTTATAGACTGTGGTGTGTCTCAGTGCGTCACATTTTCAGTGAGGCTGATCAAAGCTGCTCGTCCTGTACTGAAGAGGAGGAGCGTTTTTGACCGAGCTGCTACATACGGCTCTTCAGCTTGAGTGTAATGACGCTCAACAACATGAACATTACTATAATTAACTGGCTTTAAAAGTCAAGAATGAGGATTAGTGATGATCAGAAATATctggatgtttaaaaaaaatactaataaaaataataataataataaaacataaaactttCCTGGCACCTGGGGCTGGGTATCAAAATTCAGTACTTTTCTGAAAATCACCTGAACCTGCATTCAAcattaaatagcaacagtataACCAACAGAGGTGtgagaaaatattaatatataacttTGCAATATTGTATCAATTCTTAAAAGCGGTATAGATTTTGAATTAAAAGTTTACAGGtcaagattggtgtcagaagtggatCATACTGTGGTGTGTTTAAACTCCGCCCACTGTTCTTTGAttgcataaaaaagtaaaagtttctCAGATTACTTTTACACTAAACTGGCAATAGTATTCTGTGCTGGCCTGCATTGAGCTGCTCAGCCATGAAAACTAAATgacaaaatagaaaattggatgtaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192777 True 858 lncRNA 0.35 1 18827128 18827985

Neighbor

gene id symbol gene type direction distance location
exosc4 exosc4,exos4 coding upstream 985 18821418 ~ 18826143 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding upstream 10731 18794903 ~ 18816397 (+)
LOC103034870 NA coding upstream 41770 18753807 ~ 18785358 (+)
LOC111194332 NA coding upstream 1523037 17235199 ~ 17304091 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 1822324 16994339 ~ 17004804 (+)
LOC111188235 NA coding downstream 102894 18930879 ~ 18932145 (+)
LOC103047721 NA coding downstream 141901 18969886 ~ 18987441 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding downstream 266781 19094766 ~ 19119530 (+)
LOC111194335 NA coding downstream 598009 19425994 ~ 19431174 (+)
ripk1 NA coding downstream 1260311 20088296 ~ 20115213 (+)
G142369 NA non-coding upstream 13746 18812978 ~ 18813382 (+)
G142368 NA non-coding upstream 17647 18808877 ~ 18809481 (+)
G142365 NA non-coding upstream 61425 18764058 ~ 18765703 (+)
G142360 NA non-coding upstream 111332 18715579 ~ 18715796 (+)
G142359 NA non-coding upstream 114713 18709438 ~ 18712415 (+)
G142371 NA non-coding downstream 362 18828347 ~ 18831508 (+)
G142377 NA non-coding downstream 25415 18853400 ~ 18854020 (+)
G142380 NA non-coding downstream 32366 18860351 ~ 18860741 (+)
G142382 NA non-coding downstream 36206 18864191 ~ 18870899 (+)
G142385 NA non-coding downstream 38322 18866307 ~ 18895007 (+)
G142166 LOC108436878 other upstream 1622635 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 1753644 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 1841833 16972202 ~ 16985295 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other upstream 1859178 16948382 ~ 16967950 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 3425224 15385616 ~ 15401904 (+)
G142378 gpaa1 other downstream 28251 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other downstream 37465 18865450 ~ 18870317 (+)
G142620 NA other downstream 908321 19736306 ~ 19868292 (+)
rnf138 NA other downstream 1374663 20202648 ~ 20220149 (+)
G142820 NA other downstream 1954598 20782583 ~ 20790122 (+)

Expression


Co-expression Network