G142378 (gpaa1)


Basic Information

Item Value
gene id G142378
gene name gpaa1
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18856236 ~ 18893509 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU192788
CTTGGGCAGATGTGGTGTGACGCAGGCGGCCACAGGCACCAGTGTGATGGCTAAGATGAAGCCCAGGGAGAAGTTAATGAGAGCCGTGCAGCCCAACAGCACAGCCAGGTGCACATCATCCATGTGTGTAAGCACACTGTACCtacctgtgtgtgttgtggggcAGTGCCAGGCCTGCAGTGTAGATGGCTATAGCAGTGAGAACTACAGCCTCGGTCTCGGACACGGGGAAGTGCTCTACTGCAGTCTCCTGAGAGAGAACCGGCAGGGTGTACAGAGCCACGCCCGTCAGGTGACTGATCACCACCGGAGTCAACACGGACAGAACCCCTGGGCTGGACGGCTGGAGGGAAAATTTTATATGAACagagcacaaaaataataataataataataataataataa
>TU192790
CTTGGGCAGATGTGGTGTGACGCAGGCGGCCACAGGCACCAGTGTGATGGCTAAGATGAAGCCCAGGGAGAAGTTAATGAGAGCCGTGCAGCCCAACAGCACAGCCAGGTGCACATCATCCATGTGTGTAAGCACACTGTACCtacctgtgtgtgttgtggggcAGTGCCAGGCCTGCAGTGTAGATGGCTATAGCAGTGAGAACTACAGCCTCGGTCTCGGACACGGGGAAGTGCTCTACTGCAGTCTCCTGAGAGAGAACCGGCAGGGTGTACAGAGCCACGCCCGTCAGGTGACTGATCACCACCGGAGTCAACACGGACAGAACCCCTGGGCTGGACGGCTGGAGGGAAAATTTTATATGAACagagcacaaaaataataataataattattattattattatt

Function

symbol description
gpaa1 Predicted to be involved in attachment of GPI anchor to protein. Predicted to be integral component of membrane. Predicted to be part of GPI-anchor transamidase complex. Orthologous to human GPAA1 (glycosylphosphatidylinositol anchor attachment 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192788 False 406 TUCP 0.52 3 18856236 18893509
TU192790 True 408 TUCP 0.52 2 18856236 18858507

Neighbor

gene id symbol gene type direction distance location
exosc4 exosc4,exos4 coding upstream 30093 18821418 ~ 18826143 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding upstream 39839 18794903 ~ 18816397 (+)
LOC103034870 NA coding upstream 70878 18753807 ~ 18785358 (+)
LOC111194332 NA coding upstream 1552145 17235199 ~ 17304091 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 1851432 16994339 ~ 17004804 (+)
LOC111188235 NA coding downstream 37370 18930879 ~ 18932145 (+)
LOC103047721 NA coding downstream 76377 18969886 ~ 18987441 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding downstream 201257 19094766 ~ 19119530 (+)
LOC111194335 NA coding downstream 532485 19425994 ~ 19431174 (+)
ripk1 NA coding downstream 1194787 20088296 ~ 20115213 (+)
G142377 NA non-coding upstream 2216 18853400 ~ 18854020 (+)
G142371 NA non-coding upstream 24728 18828347 ~ 18831508 (+)
G142372 NA non-coding upstream 28251 18827128 ~ 18827985 (+)
G142369 NA non-coding upstream 42854 18812978 ~ 18813382 (+)
G142368 NA non-coding upstream 46755 18808877 ~ 18809481 (+)
LOC103030232 NA non-coding downstream 30484 18923993 ~ 18930488 (+)
G142397 NA non-coding downstream 57705 18951214 ~ 18957062 (+)
G142401 NA non-coding downstream 97680 18991189 ~ 18994237 (+)
G142416 NA non-coding downstream 226743 19120252 ~ 19121602 (+)
G142432 NA non-coding downstream 277018 19170527 ~ 19170796 (+)
G142166 LOC108436878 other upstream 1651743 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 1782752 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 1870941 16972202 ~ 16985295 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other upstream 1888286 16948382 ~ 16967950 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 3454332 15385616 ~ 15401904 (+)
G142620 NA other downstream 842797 19736306 ~ 19868292 (+)
rnf138 NA other downstream 1309139 20202648 ~ 20220149 (+)
G142820 NA other downstream 1889074 20782583 ~ 20790122 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 2675573 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 2705173 21598682 ~ 21611682 (+)

Expression


Co-expression Network