G142384 (gpaa1,LOC102780288)


Basic Information

Item Value
gene id G142384
gene name gpaa1,LOC102780288
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18865450 ~ 18870317 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU192797
tgcactagtatatgtaAATCATACAAAAGCTATATTCTTAcacattaaatgttttgtatgtGTATAGATCATTGCTTTTATATGCAAGAGCCTTGCATTTCAATTTCTGACTTGAACCAATATTCACTATAAGCACCATTACCCAGTTATATCACTGGAATAATTTTCTATACTGCACATAATTGTATTTATCATATTAATCAGCTGTCTACTGTACTGCATGTTCATGcaccttgtgtcttgtcttgCATAACGTCTGTCTAATGTCTTTGTTTGCACTAACGTCCCTCTGTATTGATGATTTAGCCACACAGTGTTTCATTTTACAATACAACCCAGTACCAGTGTAACAACAAAGTTGAATTGAATAGAAATGCTACAAAATTGGACTTGTAACAGAGTCTTTTAACCTGAAGTCCACCTAAAATGACATAAGTTGCATGACTGTGACAAAACATACTAAGCTTAAAAGAAGGCACCttacttctaaaatactgtgCCAGACCCAGCAGAAGGCCCACTGCCTGGTTGTTGCTGTTGTCAGGACTGCAGGGGGCACTAAGCACCAACGCTTCTGTTCGTGGAGCTCGAGGAGCACGCAGGATCCCGTACACATTAATGCCTCGGACCATATATCGCTCCTTGTTCTCATCAGGAAACGGCAGAGTGCGAGAGAAGCTTTGGGTGAAGACCTCCAGCCCTCTGTCCTGCATGGTCTTCACCAGCCAGTCTACTGGCATCCCCCCAGCCTTTCTTTTGTGGCCTGCGAATTCCCTCCCAGTGGCCAAGGCTCTCTCTCCTGCTGGAAACCGTTCCTCCACCATGGTAGAACCCATGGCATTCTCAGACATGTATGTTCGTAGAGTAAAGGGTTCAAACGCCAGGCCCATGAACCAGGCAATGCCCGCCAAATAGCACACCACGCATATAGGTGTGTTAAGGCGGGTGAGGAGAGTGGTCAGGGCCTTCCGTCGATTGGGGTCAGATAACAAACCCA

Function

symbol description
gpaa1 Predicted to be involved in attachment of GPI anchor to protein. Predicted to be integral component of membrane. Predicted to be part of GPI-anchor transamidase complex. Orthologous to human GPAA1 (glycosylphosphatidylinositol anchor attachment 1).

NR:

description
PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192797 True 997 TUCP 0.45 4 18865450 18870317

Neighbor

gene id symbol gene type direction distance location
exosc4 exosc4,exos4 coding upstream 39307 18821418 ~ 18826143 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding upstream 49053 18794903 ~ 18816397 (+)
LOC103034870 NA coding upstream 80092 18753807 ~ 18785358 (+)
LOC111194332 NA coding upstream 1561359 17235199 ~ 17304091 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 1860646 16994339 ~ 17004804 (+)
LOC111188235 NA coding downstream 60562 18930879 ~ 18932145 (+)
LOC103047721 NA coding downstream 99569 18969886 ~ 18987441 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding downstream 224449 19094766 ~ 19119530 (+)
LOC111194335 NA coding downstream 555677 19425994 ~ 19431174 (+)
ripk1 NA coding downstream 1217979 20088296 ~ 20115213 (+)
G142380 NA non-coding upstream 4709 18860351 ~ 18860741 (+)
G142377 NA non-coding upstream 11430 18853400 ~ 18854020 (+)
G142371 NA non-coding upstream 33942 18828347 ~ 18831508 (+)
G142372 NA non-coding upstream 37465 18827128 ~ 18827985 (+)
G142369 NA non-coding upstream 52068 18812978 ~ 18813382 (+)
LOC103030232 NA non-coding downstream 53676 18923993 ~ 18930488 (+)
G142397 NA non-coding downstream 80897 18951214 ~ 18957062 (+)
G142401 NA non-coding downstream 120872 18991189 ~ 18994237 (+)
G142416 NA non-coding downstream 249935 19120252 ~ 19121602 (+)
G142432 NA non-coding downstream 300210 19170527 ~ 19170796 (+)
G142166 LOC108436878 other upstream 1660957 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 1791966 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 1880155 16972202 ~ 16985295 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other upstream 1897500 16948382 ~ 16967950 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 3463546 15385616 ~ 15401904 (+)
G142620 NA other downstream 865989 19736306 ~ 19868292 (+)
rnf138 NA other downstream 1332331 20202648 ~ 20220149 (+)
G142820 NA other downstream 1912266 20782583 ~ 20790122 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 2698765 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 2728365 21598682 ~ 21611682 (+)

Expression


Co-expression Network