G142385


Basic Information

Item Value
gene id G142385
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18866307 ~ 18895007 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU192799
gtgtatttcagtgtttttaaatgttagctagtttaatctatctcctctctttcttttttcctccttgTCACCTTGCTAACATGAGattaacatcttaATCATGAATGGAATGTATTTCTTGGGTATCAGAGTTTCACAGCCTCCTGACGCAGACGAAGGAGTAGGCCTTGTTGCATGGAATATCATTCCAGTCCTTCTGGGCTGTaggcaaagaaaaacatgtgattttaaaactgagttaacaataataaagaaataacttTAACTACAAACTGAAACTTACAACCATAGTTGATGTGCACACAGCACTCTCCACTGCTGTGATTGGGCTCCTTGTTGTTCCACTtgctgtacctgtacctgttcCCGTCAGACCAGAGCCAGCTGTTCTTCTCTGGCAGTTGGAGAGACCGATCCATGTTTCTTGCTCTTTGGGGTCGTAAGCACGGACCAGAGCCTTCACCACTTGATACTCATTCTCACTGTGGATTGAGGCCAGGTTTCCCCCCAGATTTATACAGTAAGCCTGGAAAAAGAGCAGAAATTAAATCTGTAACACAGTTCTTACTTCCAGCTGATTGTATAGAAAGGAGTTGACAAACCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192799 True 605 lncRNA 0.42 3 18866307 18895007

Neighbor

gene id symbol gene type direction distance location
exosc4 exosc4,exos4 coding upstream 40164 18821418 ~ 18826143 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding upstream 49910 18794903 ~ 18816397 (+)
LOC103034870 NA coding upstream 80949 18753807 ~ 18785358 (+)
LOC111194332 NA coding upstream 1562216 17235199 ~ 17304091 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 1861503 16994339 ~ 17004804 (+)
LOC111188235 NA coding downstream 35872 18930879 ~ 18932145 (+)
LOC103047721 NA coding downstream 74879 18969886 ~ 18987441 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding downstream 199759 19094766 ~ 19119530 (+)
LOC111194335 NA coding downstream 530987 19425994 ~ 19431174 (+)
ripk1 NA coding downstream 1193289 20088296 ~ 20115213 (+)
G142380 NA non-coding upstream 5566 18860351 ~ 18860741 (+)
G142377 NA non-coding upstream 12287 18853400 ~ 18854020 (+)
G142371 NA non-coding upstream 34799 18828347 ~ 18831508 (+)
G142372 NA non-coding upstream 38322 18827128 ~ 18827985 (+)
G142369 NA non-coding upstream 52925 18812978 ~ 18813382 (+)
LOC103030232 NA non-coding downstream 28986 18923993 ~ 18930488 (+)
G142397 NA non-coding downstream 56207 18951214 ~ 18957062 (+)
G142401 NA non-coding downstream 96182 18991189 ~ 18994237 (+)
G142416 NA non-coding downstream 225245 19120252 ~ 19121602 (+)
G142432 NA non-coding downstream 275520 19170527 ~ 19170796 (+)
G142166 LOC108436878 other upstream 1661814 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 1792823 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 1881012 16972202 ~ 16985295 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other upstream 1898357 16948382 ~ 16967950 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 3464403 15385616 ~ 15401904 (+)
G142620 NA other downstream 841299 19736306 ~ 19868292 (+)
rnf138 NA other downstream 1307641 20202648 ~ 20220149 (+)
G142820 NA other downstream 1887576 20782583 ~ 20790122 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 2674075 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 2703675 21598682 ~ 21611682 (+)

Expression


Co-expression Network