G142603


Basic Information

Item Value
gene id G142603
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 19521677 ~ 19521888 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193091
gtttggacaatgaaactgaaacacctggttttagaccacaataattgattgtggtgacggacagttctggtggaaacaggagagttgaggtgcacattgaattctgcgtgatttgatcagccgtggttttatgtttttttggatacaatcccggttagcacccgaacatccctttcagacagcttcctcttacagcgtccacagttaatcct

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
TU193091 True 212 lncRNA 0.44 1 19521677 19521888

Neighbor

gene id symbol gene type direction distance location
LOC111194335 NA coding upstream 90503 19425994 ~ 19431174 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding upstream 402147 19094766 ~ 19119530 (+)
LOC103047721 NA coding upstream 534236 18969886 ~ 18987441 (+)
LOC111188235 NA coding upstream 589532 18930879 ~ 18932145 (+)
exosc4 exosc4,exos4 coding upstream 695534 18821418 ~ 18826143 (+)
ripk1 NA coding downstream 566408 20088296 ~ 20115213 (+)
mep1b LOC108439312 coding downstream 701888 20223776 ~ 20245141 (+)
LOC111194338 LOC108440942,LOC108268057 coding downstream 1034878 20556766 ~ 20574038 (+)
LOC111194337 adcy1 coding downstream 1089607 20611495 ~ 20667477 (+)
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding downstream 1193656 20715544 ~ 20774155 (+)
G142458 NA non-coding upstream 88620 19432674 ~ 19433057 (+)
G142455 NA non-coding upstream 89539 19431431 ~ 19432138 (+)
G142453 NA non-coding upstream 99215 19419660 ~ 19422462 (+)
G142450 NA non-coding upstream 103994 19413632 ~ 19417683 (+)
LOC111194334 NA non-coding upstream 239561 19230169 ~ 19282116 (+)
G142614 NA non-coding downstream 172048 19693936 ~ 19696283 (+)
G142619 NA non-coding downstream 202557 19724445 ~ 19728971 (+)
G142656 NA non-coding downstream 521215 20043103 ~ 20097234 (+)
G142610 NA non-coding downstream 594869 20116757 ~ 20117450 (+)
G142726 NA non-coding downstream 616238 20138126 ~ 20140399 (+)
G142378 gpaa1 other upstream 628168 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other upstream 651360 18865450 ~ 18870317 (+)
G142166 LOC108436878 other upstream 2317184 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 2448193 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 2536382 16972202 ~ 16985295 (+)
G142620 NA other downstream 214418 19736306 ~ 19868292 (+)
rnf138 NA other downstream 680760 20202648 ~ 20220149 (+)
G142820 NA other downstream 1260695 20782583 ~ 20790122 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 2047194 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 2076794 21598682 ~ 21611682 (+)

Expression


Co-expression Network