G142610


Basic Information

Item Value
gene id G142610
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 20116757 ~ 20117450 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193098
acaattttgtgcttcagtaagtcagtaaaaagtagttaggagtattcaaatcaataaaatgataagggtgcccatacttttgcaccggtcaaagttttgtttaatgcatattgcacattttctgttagtacaataaacctcatttattCACATTATGATTGTTAAAGATCAAAGGACTTTACATGACAGTGATGTATTGTTTAAGTGATGTGGAAATACTGACCCACACTTtcagaaactgtgattaataaaaagaaaaaggcagTGGAGTATCCAGGTTCATCTGTATCTGTTAAGTGACAGAGACCGAGATGGCATGGACTCCACTGGAGCTCCATCTGTCCaaaaatgggaggagtagtttgggaggggcactgggtgatgtatgggtttagaagtggggcaggagggattggctgagctgcagcagcagcagttggcctctgatagcggtgagacgcagatgattggacgtcagcaggggggcggtactattgatattattgattgactgatttgcgtATTGTAGTTTGTTTGCGTACCaaactacacaaacacatccatcacgcctatagcacagttgaacctgagaggtcgttgcagaggcagaaatgaccaaaaaaagagtttttaatttttttttaaagcactggTATGTTTCGTTACTtctaaggaacacatttcagctattaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193098 True 694 lncRNA 0.40 1 20116757 20117450

Neighbor

gene id symbol gene type direction distance location
ripk1 NA coding upstream 1544 20088296 ~ 20115213 (+)
LOC111194335 NA coding upstream 685583 19425994 ~ 19431174 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding upstream 997227 19094766 ~ 19119530 (+)
LOC103047721 NA coding upstream 1129316 18969886 ~ 18987441 (+)
LOC111188235 NA coding upstream 1184612 18930879 ~ 18932145 (+)
mep1b LOC108439312 coding downstream 106326 20223776 ~ 20245141 (+)
LOC111194338 LOC108440942,LOC108268057 coding downstream 439316 20556766 ~ 20574038 (+)
LOC111194337 adcy1 coding downstream 494045 20611495 ~ 20667477 (+)
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding downstream 598094 20715544 ~ 20774155 (+)
LOC111194340 NA coding downstream 685850 20803300 ~ 20812844 (+)
G142656 NA non-coding upstream 19523 20043103 ~ 20097234 (+)
G142619 NA non-coding upstream 387786 19724445 ~ 19728971 (+)
G142614 NA non-coding upstream 420474 19693936 ~ 19696283 (+)
G142603 NA non-coding upstream 594869 19521677 ~ 19521888 (+)
G142458 NA non-coding upstream 683700 19432674 ~ 19433057 (+)
G142726 NA non-coding downstream 20676 20138126 ~ 20140399 (+)
G142765 NA non-coding downstream 281303 20398753 ~ 20414640 (+)
G142769 phactr1,LOC108239648,LOC107383912 non-coding downstream 292173 20409623 ~ 20434382 (+)
G142771 NA non-coding downstream 305972 20423422 ~ 20499753 (+)
G142780 NA non-coding downstream 416341 20533791 ~ 20534057 (+)
G142620 NA other upstream 248465 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 1223248 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other upstream 1246440 18865450 ~ 18870317 (+)
G142166 LOC108436878 other upstream 2912264 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 3043273 17058294 ~ 17073484 (+)
rnf138 NA other downstream 85198 20202648 ~ 20220149 (+)
G142820 NA other downstream 665133 20782583 ~ 20790122 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 1451632 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 1481232 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 1528455 21645905 ~ 21646705 (+)

Expression


Co-expression Network