rnf138


Basic Information

Item Value
gene id rnf138
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 20202648 ~ 20220149 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193252
aGTGTCTCCAGTGCAGGGAGAGTGTACCCGTGTCCATACTGCCCTCTGGAGGGACTGAGGGACATGGCTTTGGTCCAGCACTGTGTGAACCAGCATGCAGGAGAAATCAGACCAACTgtGTGCCCAATCTGCAGCCAGTTGCCCTGGGGCGAGCCTTACTACTGTAGCCGTAACCTTATTGGCCACATGCGCCTCAGACACTCCTTCAGCTACGCCGGATACATGaatgaagaggaggatgaagacatCCAGGTCTGTCGGGCTCTGCAGAATTCAGTCCAGGACTTTCCTATAATCTAcgccaatcagccataacattaaaaccacttgccttttttttagcattgtGCCACCAAAACAGCTCTAACGGCAAGATGTTTTGACCCAGTTATC
>XM_022678173.1
gaaagtgaaactGGAAGTgcaggcttgtgtgtgtgtgaagtgtgtgtgttgagcagACGGAGAGAGACAGGCTTTAAATCAGCTGTGTTTAAACGGAAGAAGAGTTTCAGAGGATCAGCAGCGACTGCACTCACTAAATTCATCCAGAGCTGAGAAATCAGTCAGAAACAGCAGCACTATGAGTCCAGAATCCAGCACTGCGGACCAGATCACGAGCGCAGACTCAGAGGAGGACTACGACTGTCCCATCTGCCAGGAGGTCTTTAAAACACCGGTCCGCACAAAGAGCTGCAGACATGTGTTCTGCAAAAGTTGCTTTGAGACTGCAGTGAAGAGTCAGGGGGCTCACTGCCCGATGTGTCGGAGCCCTGTGTCTGAGAAAGCGTGTAAAGCAAAGGATGTCCAGCAGAGGATGAGGGAGAGAAGCAGCCGGTGCAGAGCCTGTGGAGCAGTGAAATTTCTCAGCAAGATGAGACTCCACTATAAAAGCTGCAGGAAGTACAAAGAGGAATACGGGCCAATCAGTGATGCACCACCACCTCCCTCCTCCCAGAACCCAGTTCAAATACCAAGCCACAGCACTGGATTTATCCCCATCATCCCAGTTTACACACCAGTGAACAGTCTTCACAGCAGCACACTGCCCTGGATGCAGTTCCCCCTTTTCCTGCCTCCTGCATCTCCACAACCACTAAGTGTCTCCAGTGCAGGGAGAGTGTACCCGTGTCCATACTGCCCTCTGGAGGGACTGAGGGACATGGCTTTGGTCCAGCACTGTGTGAACCAGCATGCAGGAGAAATCAGACCAACTgtGTGCCCAATCTGCAGCCAGTTGCCCTGGGGCGAGCCTTACTACTGTAGCCGTAACCTTATTGGCCACATGCGCCTCAGACACTCCTTCAGCTACGCCGGATACATGaatgaagaggaggatgaagacatCCAGGTCTGTCGGGCTCTGCAGAATTCAGTCCAGGACTTTCCTATAATCTAcgccaatcagccataacattaaaaccacttgccttttttttagcattgtGCCACCAAAACAGCTCTAACGGCAAGATGTTTTGACCCAGTTATCTT

Function

GO: NA

KEGG:

id description
K10668 RNF138; E3 ubiquitin-protein ligase RNF138

RNA

RNA id representative length rna type GC content exon number start site end site
TU193252 False 393 TUCP 0.51 3 20217279 20220147
XM_022678173.1 True 1089 mRNA 0.51 8 20202648 20220149

Neighbor

gene id symbol gene type direction distance location
ripk1 NA coding upstream 87435 20088296 ~ 20115213 (+)
LOC111194335 NA coding upstream 771474 19425994 ~ 19431174 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding upstream 1083118 19094766 ~ 19119530 (+)
LOC103047721 NA coding upstream 1215207 18969886 ~ 18987441 (+)
LOC111188235 NA coding upstream 1270503 18930879 ~ 18932145 (+)
mep1b LOC108439312 coding downstream 3627 20223776 ~ 20245141 (+)
LOC111194338 LOC108440942,LOC108268057 coding downstream 336617 20556766 ~ 20574038 (+)
LOC111194337 adcy1 coding downstream 391346 20611495 ~ 20667477 (+)
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding downstream 495395 20715544 ~ 20774155 (+)
LOC111194340 NA coding downstream 583151 20803300 ~ 20812844 (+)
G142726 NA non-coding upstream 62249 20138126 ~ 20140399 (+)
G142610 NA non-coding upstream 85198 20116757 ~ 20117450 (+)
G142656 NA non-coding upstream 105414 20043103 ~ 20097234 (+)
G142619 NA non-coding upstream 473677 19724445 ~ 19728971 (+)
G142614 NA non-coding upstream 506365 19693936 ~ 19696283 (+)
G142765 NA non-coding downstream 178604 20398753 ~ 20414640 (+)
G142769 phactr1,LOC108239648,LOC107383912 non-coding downstream 189474 20409623 ~ 20434382 (+)
G142771 NA non-coding downstream 203273 20423422 ~ 20499753 (+)
G142780 NA non-coding downstream 313642 20533791 ~ 20534057 (+)
G142788 NA non-coding downstream 356560 20576709 ~ 20580373 (+)
G142620 NA other upstream 334356 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 1309139 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other upstream 1332331 18865450 ~ 18870317 (+)
G142166 LOC108436878 other upstream 2998155 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 3129164 17058294 ~ 17073484 (+)
G142820 NA other downstream 562434 20782583 ~ 20790122 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 1348933 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 1378533 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 1425756 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 1591142 21811291 ~ 21908314 (+)

Expression


Co-expression Network