G142769 (phactr1,LOC108239648,LOC107383912)


Basic Information

Item Value
gene id G142769
gene name phactr1,LOC108239648,LOC107383912
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 20409623 ~ 20434382 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193282
TGTCGGCCCGCCGGTCGTAGTCCTGTGCGTCAGCCACCTCCACATAATCACAGAAGTGGATCAGGATCTTGGCCTGCCGCAGCTCCTCCACCGTGGGCCTTTGGCTGAGCTTGCGGGATAATCTCCGTTTgatttctctcttctcctccagctcctcctgtTCATTTCGAGGTTTCAGGATGTTCCTCTGTTCCAGCTCCTCGGCGGTGGGTCTCTGGCTCAGCCgcCGTGTGAGTTTGGTGCCGATCTGTTGTCTGGACTCGTGTCTCTCCTCGTCCGTCTGCATGGGCAggatgttcttctcctccagctCTCGTTTAGACGGCCGGTTGCTCAGTTTTATAGCCAGAGAGTCTTTCCTCAGCACCTTGCGTGCTAAAGAACTTGTAAAAAGTGAGTCGTCGTCCTCTTCATCGTCTTCATCCTCGTCCTCCTCTTCCAGTTCGTCCTTGTACATGCTGGGCAGGTCCTCGTAGTCGGACTCGTCTGGCATGTTTTCTTTGTCGTCCTCACAGTCGATCACCAC

Function

symbol description
phactr1 Predicted to enable actin binding activity; protein phosphatase 1 binding activity; and protein phosphatase inhibitor activity. Acts upstream of or within vasculature development. Predicted to be located in cytoplasm; nucleus; and synapse. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 70. Orthologous to human PHACTR1 (phosphatase and actin regulator 1).

NR:

description
PREDICTED: phosphatase and actin regulator 1 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193282 True 526 lncRNA 0.55 5 20409623 20434382

Neighbor

gene id symbol gene type direction distance location
mep1b LOC108439312 coding upstream 164482 20223776 ~ 20245141 (+)
ripk1 NA coding upstream 294410 20088296 ~ 20115213 (+)
LOC111194335 NA coding upstream 978449 19425994 ~ 19431174 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding upstream 1290093 19094766 ~ 19119530 (+)
LOC103047721 NA coding upstream 1422182 18969886 ~ 18987441 (+)
LOC111194338 LOC108440942,LOC108268057 coding downstream 122384 20556766 ~ 20574038 (+)
LOC111194337 adcy1 coding downstream 177113 20611495 ~ 20667477 (+)
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding downstream 281162 20715544 ~ 20774155 (+)
LOC111194340 NA coding downstream 368918 20803300 ~ 20812844 (+)
LOC103041877 camk2d1,LOC107561529,LOC107730106,LOC107698678,LOC108436151,LOC108267517,LOC107732596 coding downstream 454581 20888963 ~ 21008006 (+)
G142726 NA non-coding upstream 269224 20138126 ~ 20140399 (+)
G142610 NA non-coding upstream 292173 20116757 ~ 20117450 (+)
G142656 NA non-coding upstream 312389 20043103 ~ 20097234 (+)
G142619 NA non-coding upstream 680652 19724445 ~ 19728971 (+)
G142614 NA non-coding upstream 713340 19693936 ~ 19696283 (+)
G142780 NA non-coding downstream 99409 20533791 ~ 20534057 (+)
G142788 NA non-coding downstream 142327 20576709 ~ 20580373 (+)
LOC111194339 NA non-coding downstream 165284 20599666 ~ 20604356 (+)
G142796 NA non-coding downstream 224519 20658901 ~ 20663865 (+)
G142814 NA non-coding downstream 267304 20701686 ~ 20708499 (+)
rnf138 NA other upstream 189474 20202648 ~ 20220149 (+)
G142620 NA other upstream 541331 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 1516114 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other upstream 1539306 18865450 ~ 18870317 (+)
G142166 LOC108436878 other upstream 3205130 17203222 ~ 17204493 (+)
G142820 NA other downstream 348201 20782583 ~ 20790122 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 1134700 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 1164300 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 1211523 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 1376909 21811291 ~ 21908314 (+)

Expression


Co-expression Network