G142825


Basic Information

Item Value
gene id G142825
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 20806761 ~ 20807209 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193355
gctacatgaagtttggaggtgtgtagtgatgaactctgaagctacatgaagtttggaggtgtgtagtgatgaactctgaagctacatgaagtttggaggtgtgtagtgatgacctctgaagctacatggagtttggaggtgtgtagtgatgaactctgaagctacatggagtttggaggtgtgtagtgatgaactctgaagctacatggagtttggaggtgtgtagtgatgaactctgaagctacatgaagtttggaggtgtgtagtgatgaactctgaagctaca
>TU193356
gctacatgaagtttggaggtgtgtagtgatgaactctgaagctacatgaagtttggaggtgtgtagtgatgaactctgaagctacatgaagtttggaggtgtgtagtgatgaactctgaagctacatggagtttggaggtgtgtagtgatgaactctgaagctacatgaagtttggaggtgtgtagtgatgaactctgaagctaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193355 True 286 lncRNA 0.44 2 20806761 20807209
TU193356 False 206 lncRNA 0.43 2 20806761 20807209

Neighbor

gene id symbol gene type direction distance location
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding upstream 32606 20715544 ~ 20774155 (+)
LOC111194337 adcy1 coding upstream 139284 20611495 ~ 20667477 (+)
LOC111194338 LOC108440942,LOC108268057 coding upstream 232723 20556766 ~ 20574038 (+)
mep1b LOC108439312 coding upstream 561620 20223776 ~ 20245141 (+)
ripk1 NA coding upstream 691548 20088296 ~ 20115213 (+)
LOC103041877 camk2d1,LOC107561529,LOC107730106,LOC107698678,LOC108436151,LOC108267517,LOC107732596 coding downstream 81754 20888963 ~ 21008006 (+)
LOC103043942 LOC108436149 coding downstream 526537 21333746 ~ 21338732 (+)
LOC111194246 LOC108436149,LOC108267579 coding downstream 532371 21339580 ~ 21349632 (+)
penk penk coding downstream 702532 21509741 ~ 21527223 (+)
LOC103045570 sdr16c5,LOC108436143 coding downstream 723132 21530341 ~ 21562050 (+)
G142823 NA non-coding upstream 7185 20799240 ~ 20799576 (+)
G142814 NA non-coding upstream 98262 20701686 ~ 20708499 (+)
G142796 NA non-coding upstream 142896 20658901 ~ 20663865 (+)
LOC111194339 NA non-coding upstream 202405 20599666 ~ 20604356 (+)
G142788 NA non-coding upstream 226388 20576709 ~ 20580373 (+)
G142833 NA non-coding downstream 33720 20840929 ~ 20841214 (+)
G142834 NA non-coding downstream 42569 20849778 ~ 20850015 (+)
G142925 NA non-coding downstream 66506 20873715 ~ 20873982 (+)
G142948 NA non-coding downstream 306046 21113255 ~ 21113653 (+)
G142951 NA non-coding downstream 337736 21144945 ~ 21148588 (+)
G142820 NA other upstream 16639 20782583 ~ 20790122 (+)
rnf138 NA other upstream 586612 20202648 ~ 20220149 (+)
G142620 NA other upstream 938469 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 1913252 18856236 ~ 18893509 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 761873 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 791473 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 838696 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 1004082 21811291 ~ 21908314 (+)
G143324 NA other downstream 1728476 22535685 ~ 22610447 (+)

Expression


Co-expression Network