G142925


Basic Information

Item Value
gene id G142925
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 20873715 ~ 20873982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193482
GCCATTTCACACTCGGCTGCGAACTGCTCCAGTGCGAGTTGTAGATCACGAGCTGATGAAGCCAATAAGACCACATCATCTGCAAAAAGCAGAGATGCTATCCCAAGGCCACCAAAACGGATCCCCTCAACACCTTGGCTGCGCCTAGAAATTCTATCCATAAAAGTTATGAACAGAATCGGTGACAGAGGGCAACCTTGGCGGAGTCCAACCCTCACTGGAAACGAGTCCGACTTACTGCCGGCAATGCGGACCAAGCTCTGACACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193482 True 268 lncRNA 0.52 1 20873715 20873982

Neighbor

gene id symbol gene type direction distance location
LOC111194340 NA coding upstream 60871 20803300 ~ 20812844 (+)
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding upstream 99560 20715544 ~ 20774155 (+)
LOC111194337 adcy1 coding upstream 206238 20611495 ~ 20667477 (+)
LOC111194338 LOC108440942,LOC108268057 coding upstream 299677 20556766 ~ 20574038 (+)
mep1b LOC108439312 coding upstream 628574 20223776 ~ 20245141 (+)
LOC103041877 camk2d1,LOC107561529,LOC107730106,LOC107698678,LOC108436151,LOC108267517,LOC107732596 coding downstream 14981 20888963 ~ 21008006 (+)
LOC103043942 LOC108436149 coding downstream 459764 21333746 ~ 21338732 (+)
LOC111194246 LOC108436149,LOC108267579 coding downstream 465598 21339580 ~ 21349632 (+)
penk penk coding downstream 635759 21509741 ~ 21527223 (+)
LOC103045570 sdr16c5,LOC108436143 coding downstream 656359 21530341 ~ 21562050 (+)
G142834 NA non-coding upstream 23700 20849778 ~ 20850015 (+)
G142833 NA non-coding upstream 32501 20840929 ~ 20841214 (+)
G142825 NA non-coding upstream 66506 20806761 ~ 20807209 (+)
G142823 NA non-coding upstream 74139 20799240 ~ 20799576 (+)
G142814 NA non-coding upstream 165216 20701686 ~ 20708499 (+)
G142948 NA non-coding downstream 239273 21113255 ~ 21113653 (+)
G142951 NA non-coding downstream 270963 21144945 ~ 21148588 (+)
G143003 NA non-coding downstream 420563 21294545 ~ 21294900 (+)
G143008 nsmaf,LOC107739938 non-coding downstream 441283 21315265 ~ 21316995 (+)
G143010 nsmaf,LOC107739938 non-coding downstream 446908 21320890 ~ 21324859 (+)
G142820 NA other upstream 83593 20782583 ~ 20790122 (+)
rnf138 NA other upstream 653566 20202648 ~ 20220149 (+)
G142620 NA other upstream 1005423 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 1980206 18856236 ~ 18893509 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 695100 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 724700 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 771923 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 937309 21811291 ~ 21908314 (+)
G143324 NA other downstream 1661703 22535685 ~ 22610447 (+)

Expression


Co-expression Network