G143010 (nsmaf,LOC107739938)


Basic Information

Item Value
gene id G143010
gene name nsmaf,LOC107739938
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21320890 ~ 21324859 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193594
CGTACATGAAACGTGGTTCAGGCATGTCCCTGTAGCGGTCCAGTAGTCTTTCcagtctctctgtgtttaaagCTCCCACAGGTTTACTGAGATCCCGAAAGGAAGCCGGATTCAACAAATCTAATTGAGGACTGCTGTAATCGTCGATAACCCAGGGAAACACAGGATACTGAGAGAGATCGTTAACACTGCGGTCTGCCAGGTTGTTGAGGTGCAGCAGGTACTGATAGTTAGAGATGTGTCCCCTCTGCCACAGCAACATGTAACTCTCTGCTGTTTGCTCTGTTATGTGGTTCTCTAAGAAAGTGGCGATGTAGTAGTACAGTTCATCCCTGTCTTTAGTATTGTAGAACTTCAAGTAGATATCTGAACACAGATCATTCTCAGTACAAAACACCTCCAGCCCCAATGGTCTCAGGCCGTGTCTTCTCTTGTAGATACGTCTGATGCTACGGAGTCCAATCTGCACCACTGAGTCAGGGTAACTGTTCAGGGGCTGGAAGTAGAGGTTGTCATCAGTGATGCACACATGTCCAGGGTTGGTCACTAATGGGGTTATCATCTCAGCCTCGCAGTCCATATGTG

Function

symbol description
nsmaf Acts upstream of or within leukocyte chemotaxis involved in immune response; leukocyte chemotaxis involved in inflammatory response; and neutrophil chemotaxis. Orthologous to human NSMAF (neutral sphingomyelinase activation associated factor).

NR:

description
PREDICTED: protein FAN

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193594 True 585 lncRNA 0.48 6 21320890 21324859

Neighbor

gene id symbol gene type direction distance location
LOC103041877 camk2d1,LOC107561529,LOC107730106,LOC107698678,LOC108436151,LOC108267517,LOC107732596 coding upstream 312884 20888963 ~ 21008006 (+)
LOC111194340 NA coding upstream 508046 20803300 ~ 20812844 (+)
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding upstream 546735 20715544 ~ 20774155 (+)
LOC111194337 adcy1 coding upstream 653413 20611495 ~ 20667477 (+)
LOC111194338 LOC108440942,LOC108268057 coding upstream 746852 20556766 ~ 20574038 (+)
LOC103043942 LOC108436149 coding downstream 8887 21333746 ~ 21338732 (+)
LOC111194246 LOC108436149,LOC108267579 coding downstream 14721 21339580 ~ 21349632 (+)
penk penk coding downstream 184882 21509741 ~ 21527223 (+)
LOC103045570 sdr16c5,LOC108436143 coding downstream 205482 21530341 ~ 21562050 (+)
rps20 rps20 coding downstream 267181 21592040 ~ 21598440 (+)
G143008 nsmaf,LOC107739938 non-coding upstream 3895 21315265 ~ 21316995 (+)
G143003 NA non-coding upstream 25990 21294545 ~ 21294900 (+)
G142951 NA non-coding upstream 172302 21144945 ~ 21148588 (+)
G142948 NA non-coding upstream 207237 21113255 ~ 21113653 (+)
G142925 NA non-coding upstream 446908 20873715 ~ 20873982 (+)
G143020 asph non-coding downstream 37739 21362598 ~ 21389925 (+)
G143034 sdcbp non-coding downstream 70832 21395691 ~ 21404675 (+)
G143052 NA non-coding downstream 124936 21449795 ~ 21450047 (+)
G143058 NA non-coding downstream 135036 21459895 ~ 21460361 (+)
G143112 NA non-coding downstream 256565 21581424 ~ 21582666 (+)
G142820 NA other upstream 530768 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1100741 20202648 ~ 20220149 (+)
G142620 NA other upstream 1452598 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 2427381 18856236 ~ 18893509 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 244223 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 273823 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 321046 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 486432 21811291 ~ 21908314 (+)
G143324 NA other downstream 1210826 22535685 ~ 22610447 (+)

Expression


Co-expression Network