G143020 (asph)


Basic Information

Item Value
gene id G143020
gene name asph
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21362598 ~ 21389925 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193605
CTTTATCGTCAACAGAAGAAACAGGGACAGACTGGGGCACTTCATCTTCTTCATGTCCTGCTTCTGACTGGCTCTGTTCTTCAGTTTTTTCTTTGACTAAAGTATCTGCTTGTTTGTAAGGTGTCTCCTTTGTTTCCACAGAGGCAGTTTTCTCCTTTAGCCCCATCAGAACTTTGGCATCGTCCACATCAAAGTCCCCGTCACCATCTGCATCATAAATTCCTCCCAGTGTACCTACGATGTTGCTGTAGTCAACCAGGTCAAACCACACAACACCCACTGACATCCAGGCACCCAGCAGAGCCAGCACGATCAGCCAGCTGAAGATAGAATGTCCCTCAGACTTCTTGGGGCTTTTACTGACAGCAGGTACGGCCTGGGGCtcTTTTTAGCCTGGTTTCGCCCCCCTTTCTTATGGCCCATGACCCCAGAGAGCAGTCTGAGTCCGGTCTTATCATAAACTCGCTCCTAACTAAAGTTAGGCGCTTCTGCACTAAACCAGCAGAactcagtaaacagtaaaactagCGCTGCAGCTCACCACTCTCTCTGTGTAGTGAAGGAACGCAGCGTGAGAGAGACAGGCGTGGATCTC

Function

symbol description
asph Predicted to enable peptidyl-aspartic acid 3-dioxygenase activity. Predicted to be involved in peptidyl-aspartic acid hydroxylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including choroidal fissure; epidermis; hatching gland; pectoral fin; and periderm.

NR:

description
PREDICTED: aspartyl/asparaginyl beta-hydroxylase isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193605 True 595 lncRNA 0.49 5 21362598 21389925

Neighbor

gene id symbol gene type direction distance location
LOC111194246 LOC108436149,LOC108267579 coding upstream 12966 21339580 ~ 21349632 (+)
LOC103043942 LOC108436149 coding upstream 23866 21333746 ~ 21338732 (+)
LOC103041877 camk2d1,LOC107561529,LOC107730106,LOC107698678,LOC108436151,LOC108267517,LOC107732596 coding upstream 354592 20888963 ~ 21008006 (+)
LOC111194340 NA coding upstream 549754 20803300 ~ 20812844 (+)
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding upstream 588443 20715544 ~ 20774155 (+)
penk penk coding downstream 119816 21509741 ~ 21527223 (+)
LOC103045570 sdr16c5,LOC108436143 coding downstream 140416 21530341 ~ 21562050 (+)
rps20 rps20 coding downstream 202115 21592040 ~ 21598440 (+)
LOC103047292 tmem68,LOC107584594 coding downstream 234468 21624393 ~ 21632573 (+)
lypla1 lypla1,lypa1 coding downstream 328396 21718321 ~ 21724125 (+)
G143010 nsmaf,LOC107739938 non-coding upstream 37739 21320890 ~ 21324859 (+)
G143008 nsmaf,LOC107739938 non-coding upstream 45603 21315265 ~ 21316995 (+)
G143003 NA non-coding upstream 67698 21294545 ~ 21294900 (+)
G142951 NA non-coding upstream 214010 21144945 ~ 21148588 (+)
G142948 NA non-coding upstream 248945 21113255 ~ 21113653 (+)
G143034 sdcbp non-coding downstream 5766 21395691 ~ 21404675 (+)
G143052 NA non-coding downstream 59870 21449795 ~ 21450047 (+)
G143058 NA non-coding downstream 69970 21459895 ~ 21460361 (+)
G143112 NA non-coding downstream 191499 21581424 ~ 21582666 (+)
G143114 NA non-coding downstream 244317 21634242 ~ 21642858 (+)
G142820 NA other upstream 572476 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1142449 20202648 ~ 20220149 (+)
G142620 NA other upstream 1494306 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 2469089 18856236 ~ 18893509 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 179157 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 208757 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 255980 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 421366 21811291 ~ 21908314 (+)
G143324 NA other downstream 1145760 22535685 ~ 22610447 (+)

Expression


Co-expression Network