G143034 (sdcbp)


Basic Information

Item Value
gene id G143034
gene name sdcbp
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21395691 ~ 21404675 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193636
CTCAGtctttgcacagtactgtgtgAACATGAACCATTACATTATACCCTTCACAGTCTACCCTTTACTATGCTATTTAAGGATGCTGGAAATATTTTTAGGATGACCTCAATGCTATAAAAACTAATTAGGATAAGAgtgacattacacacacaattttTTATACACAAAGGAGTTacattcatcaaaaaaaatagacaaaaatgtgTCTATTTTATAAAGAAGTGGTTGTGCcgcagagggagagacagagaaagcgagaaagagagggagtgagagatcTACCTTCAGCCCAATCACATTTTGTCCATTGATTTCACAGATCTGCTGGTCAGTGAGGAGTCCATTACGAGCTGCAGAGCTGTCCTTCACTATGGAGGTGATCTTGCCTTTCTTAAAGATAAATCCCAGCTGGCCGTTCATGTCCTTGTGCAGAGTGACCGTGCGTTCCAGTggcCTGTCTCGTACAGCGAGTGTGATTCTCTCAGGGTTGGCGTTCTTCAGTGCTTTGTGTGCACAGTCGCTGCTCCAGCCAGCACACGACTCTCCGTTAATCTGCAGAATCTGATCACCAAAGCGAAGTCCACCCAGCGCCGCCGCAGTGTTAGCCTGCACCAGCTGCACAAAAACACCGTTGTCTATAGCTTTGAGTCGGAGGCCGATCTTGCCGTCCATGTCTTTGCACAGCACCACCTCTCTGACACCCTGTCGGATCTCAGCTCTCTTCACGCCCAGATCACCGCCTGTTATGGGAGCAGCTGCCCAGTTCATGCCAGATGAGTGGACACTGAGAGCTCCACTGGTTTGTTCGGGAACAGTAGTAGACAGAACCTGTAGAGCATCTACACTGAGATTCAGGCCCATAAACTCACTCAGCTCGGGGTATAACTTGCCAGAAGTACCTGCCAATCTCCTCCACTTTTGACTCACTTTCGGCAGGGCTCGTCGGGCAGTGGGCGGGGTCTGGCAGTGGCAGTGCTCTGGATGGGCTGGCAGTAGGCGTGTTGTGTGCCTGGATGAACTTATCCACCTTCATGTCTTCTAAAGACGGGTACAGTGACATGGTTGGTATCTTTTCTCAGGTGCACTGGATCAGTTACCGTCCGTCTCCAGTCACGAACCAGCgcgtcctcctcctccccatCCGCCTCCGAGcgatacacacactcacacacacacacacaggcgggGCTCTGGTATTACCGGCCTAGTGGGGCCCTTTCATATGTGTTGCCCAGTTTGGCCCACTTTACCTGAACAACTGAAACGGCTAAGCTAACTAACCAAAC

Function

symbol description
sdcbp Enables syndecan binding activity. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human SDCBP (syndecan binding protein).

NR:

description
syntenin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193636 True 1289 lncRNA 0.50 7 21395691 21404675

Neighbor

gene id symbol gene type direction distance location
LOC111194246 LOC108436149,LOC108267579 coding upstream 46059 21339580 ~ 21349632 (+)
LOC103043942 LOC108436149 coding upstream 56959 21333746 ~ 21338732 (+)
LOC103041877 camk2d1,LOC107561529,LOC107730106,LOC107698678,LOC108436151,LOC108267517,LOC107732596 coding upstream 387685 20888963 ~ 21008006 (+)
LOC111194340 NA coding upstream 582847 20803300 ~ 20812844 (+)
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding upstream 621536 20715544 ~ 20774155 (+)
penk penk coding downstream 105066 21509741 ~ 21527223 (+)
LOC103045570 sdr16c5,LOC108436143 coding downstream 125666 21530341 ~ 21562050 (+)
rps20 rps20 coding downstream 187365 21592040 ~ 21598440 (+)
LOC103047292 tmem68,LOC107584594 coding downstream 219718 21624393 ~ 21632573 (+)
lypla1 lypla1,lypa1 coding downstream 313646 21718321 ~ 21724125 (+)
G143020 asph non-coding upstream 5766 21362598 ~ 21389925 (+)
G143010 nsmaf,LOC107739938 non-coding upstream 70832 21320890 ~ 21324859 (+)
G143008 nsmaf,LOC107739938 non-coding upstream 78696 21315265 ~ 21316995 (+)
G143003 NA non-coding upstream 100791 21294545 ~ 21294900 (+)
G142951 NA non-coding upstream 247103 21144945 ~ 21148588 (+)
G143052 NA non-coding downstream 45120 21449795 ~ 21450047 (+)
G143058 NA non-coding downstream 55220 21459895 ~ 21460361 (+)
G143112 NA non-coding downstream 176749 21581424 ~ 21582666 (+)
G143114 NA non-coding downstream 229567 21634242 ~ 21642858 (+)
LOC111194179 NA non-coding downstream 251104 21655779 ~ 21658620 (+)
G142820 NA other upstream 605569 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1175542 20202648 ~ 20220149 (+)
G142620 NA other upstream 1527399 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 2502182 18856236 ~ 18893509 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 164407 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 194007 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 241230 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 406616 21811291 ~ 21908314 (+)
G143324 NA other downstream 1131010 22535685 ~ 22610447 (+)

Expression


Co-expression Network