G143058


Basic Information

Item Value
gene id G143058
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21459895 ~ 21460361 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193667
accaggagtagccggaatggagattacggaattcagacgacgagcccggcgaggtggagCAGGAGTGGAGACAGGCTGGCTAGGAGGGAAGAGGTCCTCGTCGGAGGCGGTGAGTTAAAGGTCCATGACGGAGaacaagctaatgctagcaggcGGGTGCGGCAGATTCGACTGATGCgaactttcgtcacgagagatagttagttaggggaggtatttataggacggttgattgatacggggtggagttagaacgtagagttcgggcgtggtccttctcccaaacttttgttattacataacatcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193667 True 308 lncRNA 0.52 2 21459895 21460361

Neighbor

gene id symbol gene type direction distance location
LOC111194246 LOC108436149,LOC108267579 coding upstream 110263 21339580 ~ 21349632 (+)
LOC103043942 LOC108436149 coding upstream 121163 21333746 ~ 21338732 (+)
LOC103041877 camk2d1,LOC107561529,LOC107730106,LOC107698678,LOC108436151,LOC108267517,LOC107732596 coding upstream 451889 20888963 ~ 21008006 (+)
LOC111194340 NA coding upstream 647051 20803300 ~ 20812844 (+)
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding upstream 685740 20715544 ~ 20774155 (+)
penk penk coding downstream 49380 21509741 ~ 21527223 (+)
LOC103045570 sdr16c5,LOC108436143 coding downstream 69980 21530341 ~ 21562050 (+)
rps20 rps20 coding downstream 131679 21592040 ~ 21598440 (+)
LOC103047292 tmem68,LOC107584594 coding downstream 164032 21624393 ~ 21632573 (+)
lypla1 lypla1,lypa1 coding downstream 257960 21718321 ~ 21724125 (+)
G143052 NA non-coding upstream 9848 21449795 ~ 21450047 (+)
G143034 sdcbp non-coding upstream 55220 21395691 ~ 21404675 (+)
G143020 asph non-coding upstream 69970 21362598 ~ 21389925 (+)
G143010 nsmaf,LOC107739938 non-coding upstream 135036 21320890 ~ 21324859 (+)
G143008 nsmaf,LOC107739938 non-coding upstream 142900 21315265 ~ 21316995 (+)
G143112 NA non-coding downstream 121063 21581424 ~ 21582666 (+)
G143114 NA non-coding downstream 173881 21634242 ~ 21642858 (+)
LOC111194179 NA non-coding downstream 195418 21655779 ~ 21658620 (+)
G143127 NA non-coding downstream 240461 21700822 ~ 21701945 (+)
G143172 mrpl15 non-coding downstream 251005 21711366 ~ 21715175 (+)
G142820 NA other upstream 669773 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1239746 20202648 ~ 20220149 (+)
G142620 NA other upstream 1591603 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 2566386 18856236 ~ 18893509 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 108721 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 138321 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 185544 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 350930 21811291 ~ 21908314 (+)
G143324 NA other downstream 1075324 22535685 ~ 22610447 (+)

Expression


Co-expression Network