plag1 (plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428)


Basic Information

Item Value
gene id plag1
gene name plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21569082 ~ 21579724 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193729
GCAGGCGGAGGACGCTCCCAAGCTGAATACTGCTGCTGCCACATCCGCTGGAGAAACGACACCATCTCTGGACTTCCTGTCTCCGCTGTTCAACTTCCTGCCCTATGGTCAAGGGGCGGGGCCTGCCCTGGGGGTTTCCTACAGCCAGGAGGAAGGGCTGCCCATAATAACGCCCTCCCAAGATGTGCCTGACCCTCTAGGTGCACTTCACACGCTCCCGCACCCACCCACGCTCACACAGACGCATGGGCTCACTTCCAGTTACACGCACTCACAAAGCCTGAATACAACCACCACCCTGCCTCGATTCCACCAGGCCTTCCAGTGACCCAATGTAAATGTACGCACGTACCTAGCTACCTTAGCACTTACTCGAAAGCATACCCACACTTTACTGTCAACTTGGCACttaattgtaaacaaaaaaaacacaacattgtGACTCTCTTTCTCAAGCCAGTAACACGGTTATAATATATGTGCCTTTGAGAACATATCACTTACTTGTTTATATCTGGAGGCGTTTTAGCAATAGAGGATGTTGAACATCACCTGACAGCTGTCATTCAAAATGAAACAATCACTTTGATAAAGCATGCGTGCCTGCAAAGCAGAGCTCAGTTTGCAGTGAAGTTTTGCTCTCAAATGCTGAGAGCATGTAGCTTTCAAAACCCTCCCATTTAGCACTTTGAACTTCTAATGATGCGGAAGTTCCATCaaagctaaaaaatatatatttttcagattctttttgttgttgttgttgatctTCATTCTCATTTGTTGGCCCATAAGCTGTTGGGTACTGAAATGCCA
>XM_007231069.3
AGCGACATGTTACCTAGCCAATAAGAATCGACAAGTGGGCGTGGTTATCGAGTGGGCGTGGTCTATCCGGGTTCGGCTGCACCGCAGCGCATAGCCTACACAATGGCTGCTGGAAAGAGGAGAAAGCAAACAATTTTCAGGCCCGCCGCGTCCAGcaaaaaatatgagaaaaaaattattaaaaattcgGAGAAGAGTTGAAAGTCCAGAAAAACGCTCTAGAAAGGATGTTAAGGCTCCCACGGGCCTGGTCTCTCCGTGGTGTTGAAGATTCGGCCTCTCTTGCTCCGTCAGCATTCGGACACACTGCACGTGTCCACCGCGTGGCCAGCCCGTGCTAAGTTGCCATGGCCACAGTCTCCCCTGATGATGACTGCCCCAACCCGGCAGAGCGTGACCGAGCGAGGAAGAGGAGGCTGGAGGGAAAAGGGAGGAAGAACTTCCTGTGTCAGCTATGTGAGAAGGCCTTCAACAGCGTGGAGAAGCTGAAGGTGCACTCTTACTCTCACACGGGCGAGAGGCCGTACCGCTGCACACACAACGACTGCACCAAGGCCTTCGTCTCAAAGTACAAACTGCTACGGCACATGGCCACACACTCACCAGAGAAGACCCATAAGTGCAGCTACTGTGAGAAGATGTTTCATCGCAAAGACCACCTGAAGAACCACCTTCACACGCATGACCCCAACAAAGAGGCCTTCAGCTGCACAGAGTGCGGCAAGAGCTACAACACCAAGCTGGGCTTTCGACGGCACCAGGCCCTCCACTCTGCTCACCACGGAGACCTCACCTGTCAGGTGTGTCTGCAGCCGTACCCAAGCACCACTTTGCTGTTGGAGCACCTGCGTAGCCATGCTGGCAAGAGTGCCACTGGGGCTAAGGAGAAGCGCCACCAGTGCGAGCACTGCGAGCGGCGCTTCTACACCCGCAAGGACGTGCGTCGTCACCTGGTGGTACACACAGGCCGCAAGGACTTCCTGTGCCAGTACTGTGCCCAGCGCTTCGGCCGCAAGGACCACCTGACCCGGCATGTGAAGAAGAGCCACGCCCACGAGCTGCTGCGGGTGAAAGCAGAGCCAATGGAGCTGCTGGAGCCACACCAAACTCCAACATCGGGATCCCTGGCATTACGCTACCCGATAGGTCACACGTCCTACTCGCCACCGCCCCCTCTGAGAGCGGAGATCGAAAGCTATCTCCTAGAGCTGCAGGCGGAGGACGCTCCCAAGCTGAATACTGCTGCTGCCACATCCGCTGGAGAAACGACACCATCTCTGGACTTCCTGTCTCCGCTGTTCAACTTCCTGCCCTATGGTCAAGGGGCGGGGCCTGCCCTGGGGGTTTCCTACAGCCAGGAGGAAGGGCTGCCCATAATAACGCCCTCCCAAGATGTGCCTGACCCTCTAGGTGCACTTCACACGCTCCCGCACCCACCCACGCTCACACAGACGCATGGGCTCACTTCCAGTTACACGCACTCACAAAGCCTGAATACAACCACCACCCTGCCTCGATTCCACCAGGCCTTCCAGTGACCCAATGTAAATGTACGCACGTACCTAGCTACCTTAGCACTTACTCGAAAGCATACCCACACTTTACTGTCAACTTGGCACttaattgtaaacaaaaaaaacacaacattgtGACTCTCTTTCTCAAGCCAGTAACACGGTTATAATATATGTGCCTTTGAGAACATATCACTTACTTGTTTATATCTGGAGGCGTTTTAGCAATAGAGGATGTTGAACATCACCTGACAGCTGTCATTCAAAATGAAACAATCACTTTGATAAAGCATGCGTGCCTGCAAAGCAGAGCTCAGTTTGCAGTGAAGTTTTGCTCTCAAATGCTGAGAGCATGTAGCTTTCAAAACCCTCCCATTTAGCACTTTGAACTTCTAATGATGCGGAAGTTCCATCaaagctaaaaaatatatatttttcagattctttttgttgttgttgttgatctTCATTCTCATTTGTTGGCCCATAAGCTGTTGGGTACTGAAATGCCAGCGTTTGAGTGACAGTGTCAGAAATCTACACAGCCAAAGGCAACCAAACCCCTCAGAGCCAGAGTGAGGAAGGCTCATCTcgttttgcttttatttttttattattattttttttttctgatggcCATTTGCCTTCATGCTGCTGCTCATTTTAAGGGCCTAAAACGTTATCAACGCAGATCTGCTTCACAGTACAAAGCAATAAAGGGAAACATGGACTGACTATACAAATCAAA

Function

symbol description
plag1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including axial vasculature; head; head mesenchyme; immature eye; and ventricular zone. Human ortholog(s) of this gene implicated in Silver-Russell syndrome and pleomorphic adenoma. Orthologous to human PLAG1 (PLAG1 zinc finger).

NR:

description
zinc finger protein PLAG1

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
K19484 PLAG1; zinc finger protein PLAG1

RNA

RNA id representative length rna type GC content exon number start site end site
TU193729 False 816 lncRNA 0.47 1 21578673 21579488
XM_007231069.3 True 2262 mRNA 0.51 3 21569082 21579724

Neighbor

gene id symbol gene type direction distance location
LOC103045570 sdr16c5,LOC108436143 coding upstream 7032 21530341 ~ 21562050 (+)
penk penk coding upstream 41859 21509741 ~ 21527223 (+)
LOC111194246 LOC108436149,LOC108267579 coding upstream 219450 21339580 ~ 21349632 (+)
LOC103043942 LOC108436149 coding upstream 230350 21333746 ~ 21338732 (+)
LOC103041877 camk2d1,LOC107561529,LOC107730106,LOC107698678,LOC108436151,LOC108267517,LOC107732596 coding upstream 561076 20888963 ~ 21008006 (+)
rps20 rps20 coding downstream 12316 21592040 ~ 21598440 (+)
LOC103047292 tmem68,LOC107584594 coding downstream 44669 21624393 ~ 21632573 (+)
lypla1 lypla1,lypa1 coding downstream 138597 21718321 ~ 21724125 (+)
LOC111194247 NA coding downstream 160517 21740241 ~ 21747485 (+)
LOC103039256 LOC103039256,LOC108436134,LOC108267332 coding downstream 239804 21819528 ~ 21839338 (+)
G143058 NA non-coding upstream 108721 21459895 ~ 21460361 (+)
G143052 NA non-coding upstream 119035 21449795 ~ 21450047 (+)
G143034 sdcbp non-coding upstream 164407 21395691 ~ 21404675 (+)
G143020 asph non-coding upstream 179157 21362598 ~ 21389925 (+)
G143010 nsmaf,LOC107739938 non-coding upstream 244223 21320890 ~ 21324859 (+)
G143112 NA non-coding downstream 1700 21581424 ~ 21582666 (+)
G143114 NA non-coding downstream 54518 21634242 ~ 21642858 (+)
LOC111194179 NA non-coding downstream 76055 21655779 ~ 21658620 (+)
G143127 NA non-coding downstream 121098 21700822 ~ 21701945 (+)
G143172 mrpl15 non-coding downstream 131642 21711366 ~ 21715175 (+)
G142820 NA other upstream 778960 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1348933 20202648 ~ 20220149 (+)
G142620 NA other upstream 1700790 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 2675573 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other upstream 2698765 18865450 ~ 18870317 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 18958 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 66181 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 231567 21811291 ~ 21908314 (+)
G143324 NA other downstream 955961 22535685 ~ 22610447 (+)
LOC111194251 NA other downstream 1805444 23385168 ~ 23395240 (+)

Expression


Co-expression Network