G143112


Basic Information

Item Value
gene id G143112
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21581424 ~ 21582666 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193730
CCCGCACTTCTTCAAAGCActtcctttattatttttttgtttgtttcccaTTACGTTCGAAAATGgtttgtataaatgtatacatgAACTTAAAGCAGTTTGTAAATACTTCAGTATTGACAGAAGTGTATAAAACTGGGAAGACCTGAATGCCTCAATCTTTTAAAGGTGTAACACAGTGATGTCATTGATGCTGCTGAGTGAATGACTCGAATGATCGAGTTGCTCTGTTTTCACTGGGAGACACAGACCTTTAGCAATTCAAACGTTCGACTGTTTCAGTGGTACCATCATCTACATCGTGTGTGTAACATGTATGCGAGTGTAACAcaatctctctgttttggatAATGCTGCTAATGGACAAAGTATAGCCCCTGATGGCGCAACAGACGTTCTCTCCTCAAGTTTTTTGatatttcttttataaatataattatttttttctttccccccCACCCTTTTCAAATCCAAGACCATAAGCGTCTGAAGGAGTGAGCGGGATTGTGTCCATCTGCCTTATATCGGGAAGTGTGAGGAGGTCTTGGGAAGTTAGTGAAGCCTTTTTTGTTCACAAACCTGTTTGGGAGCCAGATGTTGCCATTGTATCGTTCACAGAGCCCAAGTGAAACGGACCTCTTATATCACAACCTgttgaagaagagaagaaaaagagagaagagcatTTAGTGCATCCTGAGACAGCATTCCAGCCATAATGGTGTTTTACATTGTGTCCTTTTATGtcctttatcatttttaatcacatttctgtaatgCCATCCTGTGATAGTGGCTATTGCTAATCATGTATATGTTACTTTAATGTACTTTTACAAACTActgttgtgtatgtgtatagccCAAGACAGAATGATTCATATATCTCTATATGTTTGTATGGTGTgaatgtgagcatgtgtgtgtgtgtgtgtgtgtacatgtatgtgcgcatgtatttgtatttagaaCTTGCTGCTGCAGCCTGCATTTCCTTTCGTCTCCTCCAGATGACATCATCCAAAGAGAAAGTTATTTATTGGCTGGCTAGGTGAGCCAGGTGTATGCTGTAGAAGGTGAACGGCTGGCTGTTAGcgtgtgtgtctgagagagagaaagagagagagaatgcaggagaaagagagagagaacgagagagcgagaaagagagattgtgtgtctgtgtgcattcAGACGACCTTTGCTGCTATGTGAGGAGAGGAGAGATTCGGTCCAGTGTTAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193730 True 1243 lncRNA 0.41 1 21581424 21582666

Neighbor

gene id symbol gene type direction distance location
LOC103045570 sdr16c5,LOC108436143 coding upstream 19374 21530341 ~ 21562050 (+)
penk penk coding upstream 54201 21509741 ~ 21527223 (+)
LOC111194246 LOC108436149,LOC108267579 coding upstream 231792 21339580 ~ 21349632 (+)
LOC103043942 LOC108436149 coding upstream 242692 21333746 ~ 21338732 (+)
LOC103041877 camk2d1,LOC107561529,LOC107730106,LOC107698678,LOC108436151,LOC108267517,LOC107732596 coding upstream 573418 20888963 ~ 21008006 (+)
rps20 rps20 coding downstream 9374 21592040 ~ 21598440 (+)
LOC103047292 tmem68,LOC107584594 coding downstream 41727 21624393 ~ 21632573 (+)
lypla1 lypla1,lypa1 coding downstream 135655 21718321 ~ 21724125 (+)
LOC111194247 NA coding downstream 157575 21740241 ~ 21747485 (+)
LOC103039256 LOC103039256,LOC108436134,LOC108267332 coding downstream 236862 21819528 ~ 21839338 (+)
G143058 NA non-coding upstream 121063 21459895 ~ 21460361 (+)
G143052 NA non-coding upstream 131377 21449795 ~ 21450047 (+)
G143034 sdcbp non-coding upstream 176749 21395691 ~ 21404675 (+)
G143020 asph non-coding upstream 191499 21362598 ~ 21389925 (+)
G143010 nsmaf,LOC107739938 non-coding upstream 256565 21320890 ~ 21324859 (+)
G143114 NA non-coding downstream 51576 21634242 ~ 21642858 (+)
LOC111194179 NA non-coding downstream 73113 21655779 ~ 21658620 (+)
G143127 NA non-coding downstream 118156 21700822 ~ 21701945 (+)
G143172 mrpl15 non-coding downstream 128700 21711366 ~ 21715175 (+)
G143189 NA non-coding downstream 272461 21855127 ~ 21956720 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 1700 21569082 ~ 21579724 (+)
G142820 NA other upstream 791302 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1361275 20202648 ~ 20220149 (+)
G142620 NA other upstream 1713132 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 2687915 18856236 ~ 18893509 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 16016 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 63239 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 228625 21811291 ~ 21908314 (+)
G143324 NA other downstream 953019 22535685 ~ 22610447 (+)
LOC111194251 NA other downstream 1802502 23385168 ~ 23395240 (+)

Expression


Co-expression Network