LOC103047556 (LOC108436107,LOC108267807)


Basic Information

Item Value
gene id LOC103047556
gene name LOC108436107,LOC108267807
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21598682 ~ 21611682 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193733
agaGGTATTGCATTTTAATATGCTATCCCATCCCTTGTCATCCTGTGACCTCTCCTCCACTACTAATCAGATGTACAGTCTGAAGGATTGATCTATTGGTACTGGTTGCTGATGACTGGCAATAGTCCTAATATCCAGTAGTCTGCTACTGTCACCACTGAACCAGCCTGCCTTAGTGCACTttaggcatgtttttttttaggttctaGAAAAGCCAAGAGAAATGTTGGATTAAATTGGCAACACATTTTCCTGCTTATTCAAATTTTAACAGGCGGGGCTTCGGGTCATCACTGAAAGTGGATAAAGCTGTTTTCAGAGGTCGGCCTCGTTCTGACTGTCAGACAGTTTAATTCCTGTTATTAAACcagttaatatgttttaataaatctgtCCTTCtgcttttattcagttttattcagtatcGGAGGAGCTGAGGGAGGTGAAGGGCTCTTCGTACAGTGACATTTCTCTCTATAGTCTCtcgtgttttgtgtgtttgttatggCGGCTAATATTGATCTGACTCATGAGGGCACACTGATTGTGGCCATGGAGTCTACAGCCTGTGACCCTCACCACGCTTCTCTACCAGAGCTTTCTGGACTCTCCTCAATCACCTCCCAGAGTGAGTTTGTAGATGGTTCTGAGCAGCAACTTCGGGTGTATCTCAGAGTTCGTCCTTTCAGTAAAGAAGAGCTCAACAACAATGAAGACCAGGGTTGTGTTGTTCTGGAGAACACAGAAACTGCTGCACTTCACGCTCCTAAAGGTTCTGCCACAATGAAGAGCAGTGAGAAGGGAATCGGCCAGCAGCTTCACAAGTTCAGCTTCACCAAGATCTTTGGGTCAGAGTCGACTCAGGCAGAGTTCTTTGATGGAACAATCAGACTTCAAGTGCAGGACTTCCTGCAGGGCAGAAATGCGCTAGTGTTCAGTTATGGAGTGACCAACGCTGGAAAAACGCATACTATTCAAGGCATGTGCTTTCAGgctgttttctgtttaaaaactcatttctacTTAAAAATTTAC
>XM_022677638.1
AGCTGTTTTCAGAGGTCGGCCTCGTTCTGACTGTCAGACAGTTTAATTCCTGTTATTAAACcagttaatatgttttaataaatctgtCCTTCtgcttttattcagttttattcagtatcGGAGGAGCTGAGGGAGGTGAAGGGCTCTTCGTACAGTGACATTTCTCTCTATAGTCTCtcgtgttttgtgtgtttgttatggCGGCTAATATTGATCTGACTCATGAGGGCACACTGATTGTGGCCATGGAGTCTACAGCCTGTGACCCTCACCACGCTTCTCTACCAGAGCTTTCTGGACTCTCCTCAATCACCTCCCAGAGTGAGTTTGTAGATGGTTCTGAGCAGCAACTTCGGGTGTATCTCAGAGTTCGTCCTTTCAGTAAAGAAGAGCTCAACAACAATGAAGACCAGGGTTGTGTTGTTCTGGAGAACACAGAAACTGCTGCACTTCACGCTCCTAAAGGTTCTGCCACAATGAAGAGCAGTGAGAAGGGAATCGGCCAGCAGCTTCACAAGTTCAGCTTCACCAAGATCTTTGGGTCAGAGTCGACTCAGGCAGAGTTCTTTGATGGAACAATCAGACTTCAAGTGCAGGACTTCCTGCAGGGCAGAAATGCGCTAGTGTTCAGTTATGGAGTGACCAACGCTGGAAAAACGCATACTATTCAAGGTTCTCCAAAGGATCCTGGGATTCTGCCTCGTGCTCTGGAGGTGGTGTTCAGGCACATCAATGGCCGCATGTATGAGCACATGGACCTTAGGCCGTATCTGAGTTCTGATGTGCAGCAGCTGGACCCAGATCAGATCAGGGCAGAGAGATGTGCCAAGGCAGCACTCTTCAGTCTTCTCAAAGAGGAATCAGAGTCTTCCAGAAATTGCAGGAGTAGgagctcctcctcttcctcaatCAACAGCCTGTCTTTTTCTGGAGTCTCTTATGACCAGACAGTGGACAGTGTGGAGGTAGCTGTGGATGACGTGCAGTGTGTCTACTCTTTATGGGTGGCGTACTATGAGATCTATAATGAGCAGGTGTATGACCTGCTTCAGCCAAGTCTCACCAACAAAACAAAGAGGCGTCCTGCACTGCGTGTGTGTGAGGACAGTGCTGGAAACTCGTATGTCCGAGATCTGAGGTGGGTAAACATACAGGCAGCTGAGGAGGCGAATAAGGTGCTGCGTGTTGGAAATAAAAACCGCAGTGCTGCAGCCACCAAAATGAACCAGTCATCCAGCAGAAGCCACAGCATCTTTACTATCAAGCTGATGCGTATTGATGGTGGCAATGTCAATGGAATTTCAGAGCTCTCTCTGTGTGACCTGGCTGGTTCAGAGCGATGCAACAAGACTAAAACGTTTGGGGAGCGTCTGAAGGAGGCGGGAAATATTAACAACTCACTGCTGATCCTGGGAAAGTGCATTGCAGCCTTGCGCAATCAAAATGACCGGGTGAAGAGCAGCTACATTCCATTTCGTGAGAGCAAGCTTACCCGCCTCTTCCAGGGTGTGTTCTGTGGCCGTGGTAAAGCCTCTATGATTGTAAACATCAATCAGTGTGCCTCCACTTATGACGAGACCCTCCACGTCATGAAGTTTTCTGCTGTGGCCAAAGAGGTGCTTCAGGTTATCCCGCCACGCTCCCTTGAGTCTCTGGCTCCCAGACTGATTGGTCGAGATGGTAAACCTTTGCTAAGCAACAGTGTGATTGACTGCCAGGCAGTGGATGATTACCTGTCAGAAGATGAGCTGTTGGATGGTGATGAAGATGCAGACATGTCAATACTACCTCAGGAGGAGCTTTTAAGTTTGGTGGAGAGTCTGCGAGCAAAGCTGTTGGCAGAGCGAAAGAAAAATCTCCAGCAGGAGATACAGATACGCAGAGAGATGGGTGATGCCATGCTTCAGCAGATCATGGAGATTGAGGAGATTCACAGTCGTCAGATGGCTGATTTGAAGGAGAACTATGAGGAGAAGATGGACAGCACATTTGAGATGTATAAAGAGGCGCTGAAGGAGCACGCCTACCAGTGTGCTCTGGAACGCCTGGAGGATGATTACGTCCCTCTGGAGGAATACACAGAAGTGCAGGACCGAGCCAAAGAGCTCGAGAGGCGTGTGAATGAATTGGAATGGAAACAGGAAGCTTCTGCCCCTGTTACAGCTACTCCTGCCTCAGCTGTCCAGCAAGACGACTCTACACAGACTGACCCAGTTCAGTCGTCCACTGAGGAGATGGaTACTGACCGATTTAAACTTCTCTACAAGGAGAAATGTGCTGTGGAACAACTGTGTGCAGAAAAGCAAGAGTTGATTGTGTCTCTTGAGAAGCGGCTCCATGAGCTGAACGAAACCCTGCAGGAAGCTGGAGAAAGCTACATGGAGAAACTCGCTGAGGTCCAGAATCTCcagaacaaactgaactctCAGGAGCGAGAAGCTGAGCGGTTGCAGCGTGAGCTCACTGATAAAGAGGGGGAGGTGCGAGCTCTGAAGGAGGAGGTGACCAAGCTGATGGTGGACTCTGCAGGCCCGCCTCGTCAGAAACGAGGACTGCTGGTCAACATCAAAGAATCTGTGTCCACCCCATCTACTGGAAACCTGTGCCGCACAATCCGAAAATCTGTGCGCACTACTACAACATCTCTGAGGAAGAAGCCCAGCTGACTGGCTAGACTGTGCTGTTTCTGTGATTAGATGGGTGTctgaccttttttcttttatgtaatgttcgtttatttatgtaataaaaatttTAACACTACCAAACTGCAGTGTCTGGTGAAATTAT
>XM_022677639.1
AGCTGTTTTCAGAGGTCGGCCTCGTTCTGACTGTCAGACAGTTTAATTCCTGTTATTAAACcagttaatatgttttaataaatctgtCCTTCtgcttttattcagttttattcagtatcGGAGGAGCTGAGGGAGGTGAAGGGCTCTTCGTACAGTGACATTTCTCTCTATAGTCTCtcgtgttttgtgtgtttggtaaGAACAGCAGGCTCATATAAACACGAACAGTCGGGTCAGAGGTTGGTGTATTTTAGTGTAAAGgtttcctttttattatttagttatggCGGCTAATATTGATCTGACTCATGAGGGCACACTGATTGTGGCCATGGAGTCTACAGCCTGTGACCCTCACCACGCTTCTCTACCAGAGCTTTCTGGACTCTCCTCAATCACCTCCCAGAGTGAGTTTGTAGATGGTTCTGAGCAGCAACTTCGGGTGTATCTCAGAGTTCGTCCTTTCAGTAAAGAAGAGCTCAACAACAATGAAGACCAGGGTTGTGTTGTTCTGGAGAACACAGAAACTGCTGCACTTCACGCTCCTAAAGGTTCTGCCACAATGAAGAGCAGTGAGAAGGGAATCGGCCAGCAGCTTCACAAGTTCAGCTTCACCAAGATCTTTGGGTCAGAGTCGACTCAGGCAGAGTTCTTTGATGGAACAATCAGACTTCAAGTGCAGGACTTCCTGCAGGGCAGAAATGCGCTAGTGTTCAGTTATGGAGTGACCAACGCTGGAAAAACGCATACTATTCAAGGTTCTCCAAAGGATCCTGGGATTCTGCCTCGTGCTCTGGAGGTGGTGTTCAGGCACATCAATGGCCGCATGTATGAGCACATGGACCTTAGGCCGTATCTGAGTTCTGATGTGCAGCAGCTGGACCCAGATCAGATCAGGGCAGAGAGATGTGCCAAGGCAGCACTCTTCAGTCTTCTCAAAGAGGAATCAGAGTCTTCCAGAAATTGCAGGAGTAGgagctcctcctcttcctcaatCAACAGCCTGTCTTTTTCTGGAGTCTCTTATGACCAGACAGTGGACAGTGTGGAGGTAGCTGTGGATGACGTGCAGTGTGTCTACTCTTTATGGGTGGCGTACTATGAGATCTATAATGAGCAGGTGTATGACCTGCTTCAGCCAAGTCTCACCAACAAAACAAAGAGGCGTCCTGCACTGCGTGTGTGTGAGGACAGTGCTGGAAACTCGTATGTCCGAGATCTGAGGTGGGTAAACATACAGGCAGCTGAGGAGGCGAATAAGGTGCTGCGTGTTGGAAATAAAAACCGCAGTGCTGCAGCCACCAAAATGAACCAGTCATCCAGCAGAAGCCACAGCATCTTTACTATCAAGCTGATGCGTATTGATGGTGGCAATGTCAATGGAATTTCAGAGCTCTCTCTGTGTGACCTGGCTGGTTCAGAGCGATGCAACAAGACTAAAACGTTTGGGGAGCGTCTGAAGGAGGCGGGAAATATTAACAACTCACTGCTGATCCTGGGAAAGTGCATTGCAGCCTTGCGCAATCAAAATGACCGGGTGAAGAGCAGCTACATTCCATTTCGTGAGAGCAAGCTTACCCGCCTCTTCCAGGGTGTGTTCTGTGGCCGTGGTAAAGCCTCTATGATTGTAAACATCAATCAGTGTGCCTCCACTTATGACGAGACCCTCCACGTCATGAAGTTTTCTGCTGTGGCCAAAGAGGTGCTTCAGGTTATCCCGCCACGCTCCCTTGAGTCTCTGGCTCCCAGACTGATTGGTCGAGATGGTAAACCTTTGCTAAGCAACAGTGTGATTGACTGCCAGGCAGTGGATGATTACCTGTCAGAAGATGAGCTGTTGGATGGTGATGAAGATGCAGACATGTCAATACTACCTCAGGAGGAGCTTTTAAGTTTGGTGGAGAGTCTGCGAGCAAAGCTGTTGGCAGAGCGAAAGAAAAATCTCCAGCAGGAGATACAGATACGCAGAGAGATGGGTGATGCCATGCTTCAGCAGATCATGGAGATTGAGGAGATTCACAGTCGTCAGATGGCTGATTTGAAGGAGAACTATGAGGAGAAGATGGACAGCACATTTGAGATGTATAAAGAGGCGCTGAAGGAGCACGCCTACCAGTGTGCTCTGGAACGCCTGGAGGATGATTACGTCCCTCTGGAGGAATACACAGAAGTGCAGGACCGAGCCAAAGAGCTCGAGAGGCGTGTGAATGAATTGGAATGGAAACAGGAAGCTTCTGCCCCTGTTACAGCTACTCCTGCCTCAGCTGTCCAGCAAGACGACTCTACACAGACTGACCCAGTTCAGTCGTCCACTGAGGAGATGGaTACTGACCGATTTAAACTTCTCTACAAGGAGAAATGTGCTGTGGAACAACTGTGTGCAGAAAAGCAAGAGTTGATTGTGTCTCTTGAGAAGCGGCTCCATGAGCTGAACGAAACCCTGCAGGAAGCTGGAGAAAGCTACATGGAGAAACTCGCTGAGGTCCAGAATCTCcagaacaaactgaactctCAGGAGCGAGAAGCTGAGCGGTTGCAGCGTGAGCTCACTGATAAAGAGGGGGAGGTGCGAGCTCTGAAGGAGGAGGTGACCAAGCTGATGGTGGACTCTGCAGGCCCGCCTCGTCAGAAACGAGGACTGCTGGTCAACATCAAAGAATCTGTGTCCACCCCATCTACTGGAAACCTGTGCCGCACAATCCGAAAATCTGTGCGCACTACTACAACATCTCTGAGGAAGAAGCCCAGCTGACTGGCTAGACTGTGCTGTTTCTGTGATTAGATGGGTGTctgaccttttttcttttatgtaatgttcgtttatttatgtaataaaaatttTAACACTACCAAACTGCAGTGTCTGGTGAAATTAT

Function

NR:

description
PREDICTED: kinesin-like protein KIF20A

GO:

id name namespace
GO:0000910 cytokinesis biological_process
GO:0007018 microtubule-based movement biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193733 False 1035 TUCP 0.44 6 21598682 21601365
XM_022677638.1 False 2790 mRNA 0.49 19 21599683 21611682
XM_022677639.1 True 2876 mRNA 0.48 18 21599683 21611682

Neighbor

gene id symbol gene type direction distance location
rps20 rps20 coding upstream 242 21592040 ~ 21598440 (+)
LOC103045570 sdr16c5,LOC108436143 coding upstream 36632 21530341 ~ 21562050 (+)
penk penk coding upstream 71459 21509741 ~ 21527223 (+)
LOC111194246 LOC108436149,LOC108267579 coding upstream 249050 21339580 ~ 21349632 (+)
LOC103043942 LOC108436149 coding upstream 259950 21333746 ~ 21338732 (+)
LOC103047292 tmem68,LOC107584594 coding downstream 12711 21624393 ~ 21632573 (+)
lypla1 lypla1,lypa1 coding downstream 106639 21718321 ~ 21724125 (+)
LOC111194247 NA coding downstream 128559 21740241 ~ 21747485 (+)
LOC103039256 LOC103039256,LOC108436134,LOC108267332 coding downstream 207846 21819528 ~ 21839338 (+)
chmp5 chmp5,chmp5b,LOC108436133 coding downstream 238583 21850265 ~ 21856543 (+)
G143112 NA non-coding upstream 16016 21581424 ~ 21582666 (+)
G143058 NA non-coding upstream 138321 21459895 ~ 21460361 (+)
G143052 NA non-coding upstream 148635 21449795 ~ 21450047 (+)
G143034 sdcbp non-coding upstream 194007 21395691 ~ 21404675 (+)
G143020 asph non-coding upstream 208757 21362598 ~ 21389925 (+)
G143114 NA non-coding downstream 22560 21634242 ~ 21642858 (+)
LOC111194179 NA non-coding downstream 44097 21655779 ~ 21658620 (+)
G143127 NA non-coding downstream 89140 21700822 ~ 21701945 (+)
G143172 mrpl15 non-coding downstream 99684 21711366 ~ 21715175 (+)
G143189 NA non-coding downstream 243445 21855127 ~ 21956720 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 18958 21569082 ~ 21579724 (+)
G142820 NA other upstream 808560 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1378533 20202648 ~ 20220149 (+)
G142620 NA other upstream 1730390 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 2705173 18856236 ~ 18893509 (+)
G143122 LOC108436138 other downstream 34223 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 199609 21811291 ~ 21908314 (+)
G143324 NA other downstream 924003 22535685 ~ 22610447 (+)
LOC111194251 NA other downstream 1773486 23385168 ~ 23395240 (+)
LOC111194174 NA other downstream 1792006 23403688 ~ 23406894 (+)

Expression


Co-expression Network