G143122 (LOC108436138)


Basic Information

Item Value
gene id G143122
gene name LOC108436138
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21645905 ~ 21646705 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193751
ACCCTTCTTCCATCTGGTGTGTGCAGCTTCAACACAGGGAAATGCATGGTCTCAGACACAAGGCCCAGCAGTGCCTCGAAAGAGTGTGTGGTCCTCTTCTGTAGCATTAGTGTATGCTTCTCTTCTGGATCTCCGTTGCGGAACACCACCAGCCGCTTGGGTGTGTGCAGCAGAGCTGCGTGCTCGTTCCGTCTGGCCCTGCGAGCGCTGCGTGGGCCAGGGCTCTGACGCCGTATGGCCACCCGCCTGTTGCTGACCGGCCGGGCATTGTACCATGGTGGTGGTTTGCGCCGTGCCCGCTCCAGGTCAATCGGCTTCACTGTGCGCTTGTCAGAGCAGATGTAGGAATGGCCGTGGTGCAGCTGGTCAAGGGAATGGACTGTGGTATGACCACGAGGTGTGGTGATAGTTCGCACTCCAAAGGGCAGCGGAACACGCTTTGACAGACTGTCCAGCAGTCCCTCAAAGGTTTTGAACGTTCGATTATTGATAACCACGGGTAAACCACTGAACTGCGCATCACCGCTTTTGTAGAAGCACACACGCTTTGAGGAAATAGGCTGACTCATGTATGGTTGGCGATATGTCATCAAAGTATGAACGCTGCCAGAAGACTGGGCCTGTGGTGGGGCTTTCCTCACTGCTGGAGCTTCATTCATAATCTCACTGTAGGAGAGGGAGATGTAGAAGGAGGGAtgtgaagaaaagagagaaaacaaggtTACTAAACTGTTTAAACTTGTAAATCTCTGTCCACACAACAGTTTGATTCAATTGCAGGAAATGCTACTCTAATTTGAC

Function

NR:

description
PREDICTED: oxygen-regulated protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193751 True 801 TUCP 0.52 1 21645905 21646705

Neighbor

gene id symbol gene type direction distance location
LOC103047292 tmem68,LOC107584594 coding upstream 13332 21624393 ~ 21632573 (+)
rps20 rps20 coding upstream 47465 21592040 ~ 21598440 (+)
LOC103045570 sdr16c5,LOC108436143 coding upstream 83855 21530341 ~ 21562050 (+)
penk penk coding upstream 118682 21509741 ~ 21527223 (+)
LOC111194246 LOC108436149,LOC108267579 coding upstream 296273 21339580 ~ 21349632 (+)
lypla1 lypla1,lypa1 coding downstream 71616 21718321 ~ 21724125 (+)
LOC111194247 NA coding downstream 93536 21740241 ~ 21747485 (+)
LOC103039256 LOC103039256,LOC108436134,LOC108267332 coding downstream 172823 21819528 ~ 21839338 (+)
chmp5 chmp5,chmp5b,LOC108436133 coding downstream 203560 21850265 ~ 21856543 (+)
LOC103040396 myom1 coding downstream 233405 21880110 ~ 21938486 (+)
G143114 NA non-coding upstream 3047 21634242 ~ 21642858 (+)
G143112 NA non-coding upstream 63239 21581424 ~ 21582666 (+)
G143058 NA non-coding upstream 185544 21459895 ~ 21460361 (+)
G143052 NA non-coding upstream 195858 21449795 ~ 21450047 (+)
G143034 sdcbp non-coding upstream 241230 21395691 ~ 21404675 (+)
LOC111194179 NA non-coding downstream 9074 21655779 ~ 21658620 (+)
G143127 NA non-coding downstream 54117 21700822 ~ 21701945 (+)
G143172 mrpl15 non-coding downstream 64661 21711366 ~ 21715175 (+)
G143189 NA non-coding downstream 208422 21855127 ~ 21956720 (+)
G143282 NA non-coding downstream 738632 22385337 ~ 22385673 (+)
LOC103047556 LOC108436107,LOC108267807 other upstream 34223 21598682 ~ 21611682 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 66181 21569082 ~ 21579724 (+)
G142820 NA other upstream 855783 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1425756 20202648 ~ 20220149 (+)
G142620 NA other upstream 1777613 19736306 ~ 19868292 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 164586 21811291 ~ 21908314 (+)
G143324 NA other downstream 888980 22535685 ~ 22610447 (+)
LOC111194251 NA other downstream 1738463 23385168 ~ 23395240 (+)
LOC111194174 NA other downstream 1756983 23403688 ~ 23406894 (+)
G143836 NA other downstream 2181243 23827948 ~ 23916082 (+)

Expression


Co-expression Network