G143127


Basic Information

Item Value
gene id G143127
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21700822 ~ 21701945 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193757
CGAGGAGCTGTGGAGAGCCTGACACTCTCTCCCCACTGACCGATCACTTCTTCTGGATACAGAGGGTCGGACACACTGGGGCTTGTAGAACTGGATGGATCTAACCGGACTGGATATTGTGGAGCGAGGAGCTGGAGTGTTTGTGATTGAACTGGTTTGACTGTACACTGTTCAGTAAAAGTGTCATCGTCTCAGACTCAGAATGGACTAAAGCTTTTGAATCACATCTGAACTGAACAGAATCTACTGAACTGGTTTGAAGGGAATATCTTATCTAATGAAACTTTTATAGGGGAAATTTCAGGTTTTAAGTTGTACATTTGTATGTATGTTTCTAATTCTTTGCTATACAAGTTGGTTGTTTATATGTTGTGCATCCTTTTACAAAACATGGGCATGCATGTGAGCATTGCatttgaaagagaaagagaaaattaatGGCTAAGCAGTGCTTTTACTAACTAACATACTGTGGGCCACATTTCCATACAGGGCTTTATCGTATTAAGAagtgtgagtgagtaaatgaatgagtgagttaGAAAGTCAGTGACTGTGTGCcattgagagtgtgtgtgagagaaagcgaGATATTGCAGCATCTCCACACAGTGCTGCATTAAATGGCCATTGTGTTTGTATCTGCTCTGTATTGTGGCAGCAGGCCATGGAATCAGATGGGTAAACATACACTATTCaattcagcctctctctctccactgcaGCTGATAAGCAGGTGAGTATGAACACAGTGTGAGTGTATTGTCCCCACGCCCCCTCCTCAAACAGGAGTCTGGCctgtaagacacacacacacatgcacaggaTTACAAGACCCCCGGGGCACTTTGCTTGCAGAGCGCTCATTAGTGAAATACAACGACACCCCACCTTTTAAAGCAGATAATACACTAAACAAGCAcaagcacactcacacacactcacacacaggttTGTTTTCATGCAGTGGCAGAACACTGACATTTAGGCACATGTGAAAATCAGAATTAAATATCTTGAATTCTTGGCagaataaatacaagtaacattGATACATTGATATGTCAAATTTTATGTCACATTGCTTATTAAAACATCTCTATCTGTTCTACTGTGATCTGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193757 True 1124 lncRNA 0.42 1 21700822 21701945

Neighbor

gene id symbol gene type direction distance location
LOC103047292 tmem68,LOC107584594 coding upstream 68249 21624393 ~ 21632573 (+)
rps20 rps20 coding upstream 102382 21592040 ~ 21598440 (+)
LOC103045570 sdr16c5,LOC108436143 coding upstream 138772 21530341 ~ 21562050 (+)
penk penk coding upstream 173599 21509741 ~ 21527223 (+)
LOC111194246 LOC108436149,LOC108267579 coding upstream 351190 21339580 ~ 21349632 (+)
lypla1 lypla1,lypa1 coding downstream 16376 21718321 ~ 21724125 (+)
LOC111194247 NA coding downstream 38296 21740241 ~ 21747485 (+)
LOC103039256 LOC103039256,LOC108436134,LOC108267332 coding downstream 117583 21819528 ~ 21839338 (+)
chmp5 chmp5,chmp5b,LOC108436133 coding downstream 148320 21850265 ~ 21856543 (+)
LOC103040396 myom1 coding downstream 178165 21880110 ~ 21938486 (+)
LOC111194179 NA non-coding upstream 42202 21655779 ~ 21658620 (+)
G143114 NA non-coding upstream 57964 21634242 ~ 21642858 (+)
G143112 NA non-coding upstream 118156 21581424 ~ 21582666 (+)
G143058 NA non-coding upstream 240461 21459895 ~ 21460361 (+)
G143052 NA non-coding upstream 250775 21449795 ~ 21450047 (+)
G143172 mrpl15 non-coding downstream 9421 21711366 ~ 21715175 (+)
G143189 NA non-coding downstream 153182 21855127 ~ 21956720 (+)
G143282 NA non-coding downstream 683392 22385337 ~ 22385673 (+)
G143283 NA non-coding downstream 776721 22478666 ~ 22566331 (+)
G143334 NA non-coding downstream 868079 22570024 ~ 22576268 (+)
G143122 LOC108436138 other upstream 54117 21645905 ~ 21646705 (+)
LOC103047556 LOC108436107,LOC108267807 other upstream 89140 21598682 ~ 21611682 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 121098 21569082 ~ 21579724 (+)
G142820 NA other upstream 910700 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1480673 20202648 ~ 20220149 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 109346 21811291 ~ 21908314 (+)
G143324 NA other downstream 833740 22535685 ~ 22610447 (+)
LOC111194251 NA other downstream 1683223 23385168 ~ 23395240 (+)
LOC111194174 NA other downstream 1701743 23403688 ~ 23406894 (+)
G143836 NA other downstream 2126003 23827948 ~ 23916082 (+)

Expression


Co-expression Network