G143172 (mrpl15)


Basic Information

Item Value
gene id G143172
gene name mrpl15
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21711366 ~ 21715175 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193812
ATTACTTTCAGATTtttctttaaagttttaagttgaCAATATTTCCAAATAACTCAACAGTGTTTTTACACGGTTATCTTGGTGCTAAAGTAGTGCATGTATGCATGCATTTATGCTGCTGACTCACGTAAGCTGCGCTGATCGTAGTAGCTGGTTGTGATTACTCCACCATTGCGTTCCACGGCAGCAATGGCTCCTTCAGATGCTCTTTGTACTTCCAGATTCACCTTAGCACTGAATATGTCAGCTCCCTCATCTACAAGCTGAACACCGTAGTCTCGTTTGAGAGGCTGGATTGTGATCCCTCTACTATTAACCAGCTGGGTGAGGTCTATAGGCTGAGACGGGTCTATCCGGCCTAAATCTATCAAATACTGCAACCTCCGCAGAGACAGTGGAGGGTACTGTTGCCGCAGgctgtGTCCCTCATTGTAGCCATATTTAGGAATGATCAGGTAAAATGGGGTCTGTCCCCCTTCAAAGCCCAGACGTGGACGGTTCCCACGCTGTCGTTCACCTTTGTGTCCTCGTCCACTCTTATTCCCACCATGCATACCACGACCCCGGCGCTTCTCATTCTTCCTCGCTCCAGGATTGGGTCTAAGATTGGCTAGTGTTATCCGCGGTAAACTCTTCACTATATCCAGAGTTTTTCCTCCTCCAGTCCTGGATACAGACATTTTTCTgacccactcacacactctcacacagtctcacacacacatctatgCACCCGTCAACTTTCAAGGGCGAGTGTCATGGCGGAGAAGCACGTGGTTCAGCCCGAGAGGAGAAATCCCACTTCTGGGTCTGTTTGTTTGGTAGATGGACCACTAGAGGGCGCGCTCAAATGAGTCCAAAACGAATGGGATTAAAAT

Function

symbol description
mrpl15 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in visceral fat. Orthologous to human MRPL15 (mitochondrial ribosomal protein L15).

NR:

description
39S ribosomal protein L15, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193812 True 878 lncRNA 0.48 4 21711366 21715175

Neighbor

gene id symbol gene type direction distance location
LOC103047292 tmem68,LOC107584594 coding upstream 78793 21624393 ~ 21632573 (+)
rps20 rps20 coding upstream 112926 21592040 ~ 21598440 (+)
LOC103045570 sdr16c5,LOC108436143 coding upstream 149316 21530341 ~ 21562050 (+)
penk penk coding upstream 184143 21509741 ~ 21527223 (+)
LOC111194246 LOC108436149,LOC108267579 coding upstream 361734 21339580 ~ 21349632 (+)
lypla1 lypla1,lypa1 coding downstream 3146 21718321 ~ 21724125 (+)
LOC111194247 NA coding downstream 25066 21740241 ~ 21747485 (+)
LOC103039256 LOC103039256,LOC108436134,LOC108267332 coding downstream 104353 21819528 ~ 21839338 (+)
chmp5 chmp5,chmp5b,LOC108436133 coding downstream 135090 21850265 ~ 21856543 (+)
LOC103040396 myom1 coding downstream 164935 21880110 ~ 21938486 (+)
G143127 NA non-coding upstream 9421 21700822 ~ 21701945 (+)
LOC111194179 NA non-coding upstream 52746 21655779 ~ 21658620 (+)
G143114 NA non-coding upstream 68508 21634242 ~ 21642858 (+)
G143112 NA non-coding upstream 128700 21581424 ~ 21582666 (+)
G143058 NA non-coding upstream 251005 21459895 ~ 21460361 (+)
G143189 NA non-coding downstream 139952 21855127 ~ 21956720 (+)
G143282 NA non-coding downstream 670162 22385337 ~ 22385673 (+)
G143283 NA non-coding downstream 763491 22478666 ~ 22566331 (+)
G143334 NA non-coding downstream 854849 22570024 ~ 22576268 (+)
G143336 NA non-coding downstream 856538 22571713 ~ 22572857 (+)
G143122 LOC108436138 other upstream 64661 21645905 ~ 21646705 (+)
LOC103047556 LOC108436107,LOC108267807 other upstream 99684 21598682 ~ 21611682 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 131642 21569082 ~ 21579724 (+)
G142820 NA other upstream 921244 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1491217 20202648 ~ 20220149 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 96116 21811291 ~ 21908314 (+)
G143324 NA other downstream 820510 22535685 ~ 22610447 (+)
LOC111194251 NA other downstream 1669993 23385168 ~ 23395240 (+)
LOC111194174 NA other downstream 1688513 23403688 ~ 23406894 (+)
G143836 NA other downstream 2112773 23827948 ~ 23916082 (+)

Expression


Co-expression Network