G143182 (mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694)


Basic Information

Item Value
gene id G143182
gene name mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21811291 ~ 21908314 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193826
gactGTAGAAGGGTTTGAGTAATTTAttcaaaaagttcatatttattataaaatgtaaaaattccGCTAGATCAGACCATGACAGCAAAGGTGCTCGTAGCATCTCACAGACTGCTTcacatttaaacagttttaagcaCTGAGAAACTGGAGCTTTTAGAGGTCTGAAACTGGTAAGTGCATGTGTGTCTGTCAGGTCAAATTAAAGGTACACTCAATACAGGGAACAAAATCTAGAAACTAAATATAATCCAAACCTCTTGATTAATcatgcacaaaaaaaaccttcacCATTTCCCCAGGTACAACCTACCCAACAACCAACGTGAGTTCAGAGTGAATGGGGTTGAAGCcaaccacacatacacatatacaccacCAGCATAACCGTGCATGACGCTTAACTCTTACTTGACCTGTTTAGTATGATACAATTTCAACAAAAAGATATAATTCATCCCGACATAATCAGTGATCTGTGAAGGCCTAGTCCCCTTTTCCCAGAGAGTGTAACTTTAACTCGAacacgcaaacacacagcagtgttGTTGGCAGCGTTTCAGAAGGGCTCCAGAAGCATTAGACAAGGTTCCACTAGTGGAGAAGGGGGATTAAGAGGAAGGGCTGGCAATGCATGGAGGTTTTCTAGGTTTAATCGTCCTTGTCTTTGGCTCCATGTTTGAGGATACGTGTGAACTCCACATAGTTGAAGTTGCTCTTTTTGTCAATGGGCGCCTCCCTGAAGAGCTCATCCACTTCCTCGTCTGTAAATCGGTCTCCCATCGTGGTCAGAAGCTCTCGCAGGTAGTCTTCCTGAATGAAACCAGTGCCTTCCTCATCAAAGCAGGCAAAGGCGTTGCGGATCACATCCTCTGGGTCAGTGCCGTTCAGCTTCTCTCCAAACATGGTGAGGAACATTGTGAAGTTAATGGGCCCTGGAGCTTCAGTCATCATCGCCTCTAAATAGTCATCTGTCGGGTTCTTGCCCAGAGACGCCAGCATGTCGTGCAGATCTTCCTTGTCTACAAATCCATCACGATTCTGATCAATCATGTTAAAGGCCTCCTTAAACTCCTGGATCTGTGACTGGTCAAACATAGCGAAGACATTGGAAGTTGCGCGCTGAGGGCGCTTCTTGGTGGTCTTTCCCTTTGCACGTTTGCTTGACATGTTggctctgttgtgtttttacctAAAAAGAAAGTCAACGTTTTTAAACTTGATCACGAGAAATCAATACAGCAGAGAGCCCTCATAACaacaaattaaacacaataatgataaaactgtgATCTGCAACATTTTTTCTCACTGTTGCCCAACATTGATTCAGCTAAAAGCTGtgaaaagcattttaaaaataggCAGAGTGGCCAAAGTAATTACCTAAAATAGGATTTAAGCAGTCATGCCCAGCAAAGCGAGTCTAGGACAAATCTAACAATGTAATGATGATGACCAAACAGCCTGTGCTTCCTCTATAAAAGGAAACGCTAGGCTCTTAGTTGTTTTTTCCCCCCCTCACagagataaaaataatatattgcacAGCCAGATTAGGAAAGTGCTTTTTACCATTGTCTGTTtgcacttttatttaaatttgagatTTTTAAGATGAGCAACAATCAATTGTTTTGGCATACAGGTTTTCATAAAATGCTCATGGTTGATTAAACAAAAACTAGTTAAACTGGGGTGGATGCCAGAccattataaaagaaaatagcCACCTAGCTGTCCTTAACAACCCTAATTACTCAGCACTCTGGAATTCTTTCAGAGTCAGCGTTGAGCTATCTGCCATGCCAATCAGCCTCTCCTTAGTAGGAGAAGACAATCAATAAAgcctatatacagtacaatgaACATTCAAAAGTCATAAGACACTAAATTATTAGGCCAAATGTGACTAGAAAGCTGTGCAGAAACTgtcctatattttttttacccatgAGACTGCTATACATAGAGCTACCAGTACAAGTTAACCCAGTTAATGCGGTCGAGGcctgtgaaaaagagagagagggcaaaaaaaagaaagaagctgAAAATGCAACAGTTATGCAGTGATGAGTTATTTGTAATGATTAGACTGACCTTTATTGTTATCTACCTTAATTTACAGCAGTATTATTTGTGTCCACTTGAGTTTTTGGCATGCCATCTGAAGTAGtgattatattagattaaattTGCTTCAAACCTTCAAAAGTGCTCAAGAATGGAATTGTTTATGACACTGAAGGATTTAAAAAGCAATGAACTCTCAATGTGTTGTACAACTGTAGAATATTATTGGTATTACTTCTAGCTAATACTGTTATTTTGgggggttattttatttgtattgagTGCCTTCAACCATGTAACCTATGCTAGCTATATTATGTACAGTTTATAATGTTGAATCTTGCTGATTTCTTATTCAGCTTCAatcatatatacaaatatacacccTATTCCGTGAGTTTATTAGATCAAACATGATTAGATATGATGGCCGATGTTCTGCACTGGTACTGCATGGGAGAAAGCTGAAAACCAAACAAGAGGTAGGTCATACGTTTTAGAGAGGAAACGTTATTCATCATTTATGTCTTGGCTAACTGAAGAGCTAGCTAGATTAGATGATTTATTTAGGGTTTAGATGTCAATCAAACCATTTCTTTAAGATAACCAAACATACGACGAGCTATGGaagctatataaaatataacccATAAAACggaaatctatttttttaatattgatacCCATCTCAAAATTTAATCGGATAAACtcagtgagcagctcattcatgtttgtt
>TU193829
tttttttttttttttttAAGGGTTTGAGTAATTTAttcaaaaagttcatatttattataaaatgtaaaaattccGCTAGATCAGACCATGACAGCAAAGGTGCTCGTAGCATCTCACAGACTGCTTcacatttaaacagttttaagcaCTGAGAAACTGGAGCTTTTAGAGGTCTGAAACTGGTAAGTGCATGTGTGTCTGTCAGGTCAAATTAAAGGTACACTCAATACAGGGAACAAAATCTAGAAACTAAATATAATCCAAACCTCTTGATTAATcatgcacaaaaaaaaccttcacCATTTCCCCAGGTACAACCTACCCAACAACCAACGTGAGTTCAGAGTGAATGGGGTTGAAGCcaaccacacatacacatatacaccacCAGCATAACCGTGCATGACGCTTAACTCTTACTTGACCTGTTTAGTATGATACAATTTCAACAAAAAGATATAATTCATCCCGACATAATCAGTGATCTGTGAAGGCCTAGTCCCCTTTTCCCAGAGAGTGTAACTTTAACTCGAacacgcaaacacacagcagtgttGTTGGCAGCGTTTCAGAAGGGCTCCAGAAGCATTAGACAAGGTTCCACTAGTGGAGAAGGGGGATTAAGAGGAAGGGCTGGCAATGCATGGAGGTTTTCTAGGTTTAATCGTCCTTGTCTTTGGCTCCATGTTTGAGGATACGTGTGAACTCCACATAGTTGAAGTTGCTCTTTTTGTCAATGGGCGCCTCCCTGAAGAGCTCATCCACTTCCTCGTCTGTAAATCGGTCTCCCATCGTGGTCAGAAGCTCTCGCAGAGCTCTTTTT

Function

NR:

description
myosin regulatory light chain 2, smooth muscle minor isoform-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193826 True 2812 TUCP 0.39 3 21870676 21874386
TU193829 False 823 lncRNA 0.41 3 21811291 21908314

Neighbor

gene id symbol gene type direction distance location
LOC111194247 NA coding upstream 63806 21740241 ~ 21747485 (+)
lypla1 lypla1,lypa1 coding upstream 87166 21718321 ~ 21724125 (+)
LOC103047292 tmem68,LOC107584594 coding upstream 178718 21624393 ~ 21632573 (+)
rps20 rps20 coding upstream 212851 21592040 ~ 21598440 (+)
LOC103045570 sdr16c5,LOC108436143 coding upstream 249241 21530341 ~ 21562050 (+)
malrd1 NA coding downstream 49706 21958020 ~ 22107652 (+)
LOC103046886 plxdc2,LOC107724400,LOC107684879,LOC107659453,LOC107598695 coding downstream 214592 22122906 ~ 22356385 (+)
nfx1 nfx1,LOC107742139,LOC108268165 coding downstream 452323 22360637 ~ 22392511 (+)
smarcd3 smarcd3,smarcd3b,LOC103047704,LOC108442951,LOC108268163,LOC106578675 coding downstream 489815 22398129 ~ 22477982 (+)
LOC103022164 abcf2b,abcf2,LOC103022164,LOC108440639,LOC108268161,LOC107684499 coding downstream 604972 22513286 ~ 22530293 (+)
G143172 mrpl15 non-coding upstream 96116 21711366 ~ 21715175 (+)
G143127 NA non-coding upstream 109346 21700822 ~ 21701945 (+)
LOC111194179 NA non-coding upstream 152671 21655779 ~ 21658620 (+)
G143114 NA non-coding upstream 168433 21634242 ~ 21642858 (+)
G143112 NA non-coding upstream 228625 21581424 ~ 21582666 (+)
G143282 NA non-coding downstream 477023 22385337 ~ 22385673 (+)
G143283 NA non-coding downstream 570352 22478666 ~ 22566331 (+)
G143334 NA non-coding downstream 661710 22570024 ~ 22576268 (+)
G143336 NA non-coding downstream 663399 22571713 ~ 22572857 (+)
G143325 NA non-coding downstream 674360 22582674 ~ 22586315 (+)
G143122 LOC108436138 other upstream 164586 21645905 ~ 21646705 (+)
LOC103047556 LOC108436107,LOC108267807 other upstream 199609 21598682 ~ 21611682 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 231567 21569082 ~ 21579724 (+)
G142820 NA other upstream 1021169 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1591142 20202648 ~ 20220149 (+)
G143324 NA other downstream 627371 22535685 ~ 22610447 (+)
LOC111194251 NA other downstream 1476854 23385168 ~ 23395240 (+)
LOC111194174 NA other downstream 1495374 23403688 ~ 23406894 (+)
G143836 NA other downstream 1919634 23827948 ~ 23916082 (+)
ppp3ca ppp3ca,LOC103369319 other downstream 2528065 24436379 ~ 24602402 (+)

Expression


Co-expression Network