G143189


Basic Information

Item Value
gene id G143189
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21855127 ~ 21956720 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU193837
ccagaacacgcaaatctctctctctctctctctctctctctctctctctcacgtttcttagattgatctctctgatgagatgtgtaaaaactaataaaaactagcaagcccaccctaaaaacttactgaacagaaaaaataaaaacaaaatcaaattaaactataataaaaatgaaaaaatcatttaaattaaataatagttctatgcttctatgttacagtgttaattaacataattctgattatatttcgctcattcaatcagcccgaaaacagacagtttatggggcggatcgggtcgggctcataatgacagttcatggttcgggttgagtcgggctcgggcagaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193837 True 350 lncRNA 0.36 3 21855127 21956720

Neighbor

gene id symbol gene type direction distance location
LOC103039256 LOC103039256,LOC108436134,LOC108267332 coding upstream 15789 21819528 ~ 21839338 (+)
LOC111194247 NA coding upstream 107642 21740241 ~ 21747485 (+)
lypla1 lypla1,lypa1 coding upstream 131002 21718321 ~ 21724125 (+)
LOC103047292 tmem68,LOC107584594 coding upstream 222554 21624393 ~ 21632573 (+)
rps20 rps20 coding upstream 256687 21592040 ~ 21598440 (+)
malrd1 NA coding downstream 1300 21958020 ~ 22107652 (+)
LOC103046886 plxdc2,LOC107724400,LOC107684879,LOC107659453,LOC107598695 coding downstream 166186 22122906 ~ 22356385 (+)
nfx1 nfx1,LOC107742139,LOC108268165 coding downstream 403917 22360637 ~ 22392511 (+)
smarcd3 smarcd3,smarcd3b,LOC103047704,LOC108442951,LOC108268163,LOC106578675 coding downstream 441409 22398129 ~ 22477982 (+)
LOC103022164 abcf2b,abcf2,LOC103022164,LOC108440639,LOC108268161,LOC107684499 coding downstream 556566 22513286 ~ 22530293 (+)
G143172 mrpl15 non-coding upstream 139952 21711366 ~ 21715175 (+)
G143127 NA non-coding upstream 153182 21700822 ~ 21701945 (+)
LOC111194179 NA non-coding upstream 196507 21655779 ~ 21658620 (+)
G143114 NA non-coding upstream 212269 21634242 ~ 21642858 (+)
G143112 NA non-coding upstream 272461 21581424 ~ 21582666 (+)
G143282 NA non-coding downstream 428617 22385337 ~ 22385673 (+)
G143283 NA non-coding downstream 521946 22478666 ~ 22566331 (+)
G143334 NA non-coding downstream 613304 22570024 ~ 22576268 (+)
G143336 NA non-coding downstream 614993 22571713 ~ 22572857 (+)
G143325 NA non-coding downstream 625954 22582674 ~ 22586315 (+)
G143122 LOC108436138 other upstream 208422 21645905 ~ 21646705 (+)
LOC103047556 LOC108436107,LOC108267807 other upstream 243445 21598682 ~ 21611682 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 275403 21569082 ~ 21579724 (+)
G142820 NA other upstream 1065005 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1634978 20202648 ~ 20220149 (+)
G143324 NA other downstream 578965 22535685 ~ 22610447 (+)
LOC111194251 NA other downstream 1428448 23385168 ~ 23395240 (+)
LOC111194174 NA other downstream 1446968 23403688 ~ 23406894 (+)
G143836 NA other downstream 1871228 23827948 ~ 23916082 (+)
ppp3ca ppp3ca,LOC103369319 other downstream 2479659 24436379 ~ 24602402 (+)

Expression


Co-expression Network