G143324


Basic Information

Item Value
gene id G143324
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 22535685 ~ 22610447 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU194021
TTTTTACAAGATAAATAATTTTGTTGCTTCTTCTTCTCAACCGGCAACTGTTCACTTCTCACACCAGAGCTAAACCTCTCTCATCTCAGCACAGCTGCAGATCCACCACTCTACACAGTGAGAATGAACCCCAAAACAATTCTGTGTTTAACAGCACTCCTGTTCCTGTCTGTTCATCTCTGTTGTGGAGGAGATAAAGCCCCCAAGAAGAAGACACCGCGTAAAGATGTGTGGaAAATTGGACGCACAGTTCTGCTGGCCGGTCCTCCTGCACGTTCAGCTGCTGTGGCGACATCTAAATCTATATTTGGATCGGGATATGAATCTGGACATGGACCAACTGATAAAGATCTACGGGATTCTAAAAAGAACTTTCTGTCTTCTCGACGGTTAAGCGcagGAAAGCAGAGCAAGAAAAAGGGTCGAAAAAACTGAAAGATGAACCCATCTGATCTTCAGCAGTGATTGAactaaaaaagaag
>TU194024
TTCACTTCTCACACCAGACCTAAACCTCTCTCATCTCAGCACAGCTGCAGATCCACCGCTCTACACTGTGAGAATGAACCCCAAAGCATTTCTGTGTTTAACAGCACTCCTGTTCCTGTCTGTTCATCTCTGTTGTGGAGGAGATAAAGCCCCCAAGAAGATTAAGCAAACTGTAAAGCCACCGAGTAAAGCTGTGTGGaAAATTGGACGCACAGTTCTGCTGGCCGGTCCTCCTGCACGTTCAGCTGCTGTGGCGACATCTAAATCTATATTTGGATCGGGATATGAATCTGGACATGGACCAACTGATAAAGATCTACGGGATTCTAAAAAGAACTTTCTGTCTTCTCGACGGTTAAGCGcagGAAAGCAGAGCAAGAAAAAGGGTCGAAAAAACTGAAAGATGAACCCATCTGATCTTCAGCAGTGATTGAactaaaaaagaag
>TU194027
atttatttcatagaAAATTGGACGCACAGTTCTGCTGGCCGGTCCTCCTGCACGTTCAGCTGCTGTGGCGACATCTAAATCTATATTTGGATCGGGATATGAATCTGGACATGGACCAACTGATAAAGATCTACGGGATTCTAAAAAGAACTTTCTGTCTTCTCGACGGTTAAGCGcagGAAAGCAGAGCAAGAAAAAGGGTCGAAAAAACTGAAAGATGAACCCATCTGATCTTCAGCAGTGATTGAactaaaaaagaag

Function

GO:

id name namespace
GO:0048884 neuromast development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194021 True 482 TUCP 0.44 5 22591785 22610447
TU194024 False 447 TUCP 0.45 5 22535685 22610447
TU194027 False 261 lncRNA 0.42 3 22592507 22610447

Neighbor

gene id symbol gene type direction distance location
LOC103022164 abcf2b,abcf2,LOC103022164,LOC108440639,LOC108268161,LOC107684499 coding upstream 5392 22513286 ~ 22530293 (+)
smarcd3 smarcd3,smarcd3b,LOC103047704,LOC108442951,LOC108268163,LOC106578675 coding upstream 57703 22398129 ~ 22477982 (+)
nfx1 nfx1,LOC107742139,LOC108268165 coding upstream 143174 22360637 ~ 22392511 (+)
LOC103046886 plxdc2,LOC107724400,LOC107684879,LOC107659453,LOC107598695 coding upstream 179300 22122906 ~ 22356385 (+)
malrd1 NA coding upstream 428033 21958020 ~ 22107652 (+)
prkdc prkdc,LOC107724397,LOC107742141,LOC107598697 coding downstream 2198 22612645 ~ 22684530 (+)
ncf2 ncf2 coding downstream 93198 22703645 ~ 22718565 (+)
hacd1 hacd1,LOC107702201,LOC107571282,LOC107568855,LOC107691470 coding downstream 244137 22854584 ~ 22870140 (+)
LOC111194171 NA coding downstream 283188 22893635 ~ 22896991 (+)
clul1 NA coding downstream 310563 22921010 ~ 22932711 (+)
G143282 NA non-coding upstream 150012 22385337 ~ 22385673 (+)
G143189 NA non-coding upstream 578965 21855127 ~ 21956720 (+)
G143172 mrpl15 non-coding upstream 820510 21711366 ~ 21715175 (+)
G143127 NA non-coding upstream 833740 21700822 ~ 21701945 (+)
LOC111194179 NA non-coding upstream 877065 21655779 ~ 21658620 (+)
G143343 NA non-coding downstream 79086 22689533 ~ 22689904 (+)
G143363 NA non-coding downstream 126596 22737043 ~ 22738935 (+)
G143374 NA non-coding downstream 133187 22743634 ~ 22745646 (+)
G143375 LOC101487086,LOC103370675 non-coding downstream 135265 22745712 ~ 22746808 (+)
G143382 NA non-coding downstream 143605 22754052 ~ 22798828 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other upstream 627371 21811291 ~ 21908314 (+)
G143122 LOC108436138 other upstream 888980 21645905 ~ 21646705 (+)
LOC103047556 LOC108436107,LOC108267807 other upstream 924003 21598682 ~ 21611682 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 955961 21569082 ~ 21579724 (+)
G142820 NA other upstream 1745563 20782583 ~ 20790122 (+)
LOC111194251 NA other downstream 774721 23385168 ~ 23395240 (+)
LOC111194174 NA other downstream 793241 23403688 ~ 23406894 (+)
G143836 NA other downstream 1217501 23827948 ~ 23916082 (+)
ppp3ca ppp3ca,LOC103369319 other downstream 1825932 24436379 ~ 24602402 (+)
G144017 NA other downstream 2096636 24707083 ~ 24711533 (+)

Expression


Co-expression Network