G143338


Basic Information

Item Value
gene id G143338
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 22593968 ~ 22599236 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU194048
TCCCAGAGGACGTAGTAGATTCAGGAAGTGATCTCGAGCAGTCAGGTGGACGCGGTGTAGATGAATTTGGATGGCAACAGGTGGAAAATAGGActgcaaaaagaaagaaaagttcGGGATCTGTGTCGGATGGCAATTCTGAACAGTAAGTGGCAGTAATGCACCAAATATAGGCGTGCCGACTGCCAAAAAtccaacagaagaagaagaagaagaagaagtgtttctgtcggttcttgtgcgtttatacgtctgtcacggctgtgttaaatcctgtctgtctgttagtCTCCTGTTTGGTCTGTTTCggtttgatttatgtttttggtttctgttctttaataaatgatacttgcgttagcgtccgctctcctcgtccagtccttcacacagcgttacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194048 True 401 lncRNA 0.45 2 22593968 22599236

Neighbor

gene id symbol gene type direction distance location
LOC103022164 abcf2b,abcf2,LOC103022164,LOC108440639,LOC108268161,LOC107684499 coding upstream 63675 22513286 ~ 22530293 (+)
smarcd3 smarcd3,smarcd3b,LOC103047704,LOC108442951,LOC108268163,LOC106578675 coding upstream 115986 22398129 ~ 22477982 (+)
nfx1 nfx1,LOC107742139,LOC108268165 coding upstream 201457 22360637 ~ 22392511 (+)
LOC103046886 plxdc2,LOC107724400,LOC107684879,LOC107659453,LOC107598695 coding upstream 237583 22122906 ~ 22356385 (+)
malrd1 NA coding upstream 486316 21958020 ~ 22107652 (+)
prkdc prkdc,LOC107724397,LOC107742141,LOC107598697 coding downstream 13409 22612645 ~ 22684530 (+)
ncf2 ncf2 coding downstream 104409 22703645 ~ 22718565 (+)
hacd1 hacd1,LOC107702201,LOC107571282,LOC107568855,LOC107691470 coding downstream 255348 22854584 ~ 22870140 (+)
LOC111194171 NA coding downstream 294399 22893635 ~ 22896991 (+)
clul1 NA coding downstream 321774 22921010 ~ 22932711 (+)
G143325 NA non-coding upstream 7653 22582674 ~ 22586315 (+)
G143334 NA non-coding upstream 17700 22570024 ~ 22576268 (+)
G143336 NA non-coding upstream 21111 22571713 ~ 22572857 (+)
G143283 NA non-coding upstream 27637 22478666 ~ 22566331 (+)
G143282 NA non-coding upstream 208295 22385337 ~ 22385673 (+)
G143343 NA non-coding downstream 90297 22689533 ~ 22689904 (+)
G143363 NA non-coding downstream 137807 22737043 ~ 22738935 (+)
G143374 NA non-coding downstream 144398 22743634 ~ 22745646 (+)
G143375 LOC101487086,LOC103370675 non-coding downstream 146476 22745712 ~ 22746808 (+)
G143382 NA non-coding downstream 154816 22754052 ~ 22798828 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other upstream 685654 21811291 ~ 21908314 (+)
G143122 LOC108436138 other upstream 947263 21645905 ~ 21646705 (+)
LOC103047556 LOC108436107,LOC108267807 other upstream 982286 21598682 ~ 21611682 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 1014244 21569082 ~ 21579724 (+)
G142820 NA other upstream 1803846 20782583 ~ 20790122 (+)
LOC111194251 NA other downstream 785932 23385168 ~ 23395240 (+)
LOC111194174 NA other downstream 804452 23403688 ~ 23406894 (+)
G143836 NA other downstream 1228712 23827948 ~ 23916082 (+)
ppp3ca ppp3ca,LOC103369319 other downstream 1837143 24436379 ~ 24602402 (+)
G144017 NA other downstream 2107847 24707083 ~ 24711533 (+)

Expression


Co-expression Network