G143626


Basic Information

Item Value
gene id G143626
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 22956811 ~ 22958211 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU194393
tggGATCTTCGTTCATTTATACACTAGtctataaagcaaaaaaaaaaaataaaaaatacaaataaagtataataatgtACCATAGTTATTATCACTGAATATCTGTGTAGGCCACATTCAGTCAATGTTGGAAATGTAACaacggtgttttttttttttattctccgcATAGTGGCCAACTCTCCATGTATTCCCATTAGGGTGCGGGTGCAGCTAAATAATGGGAAACCTTGACTATTAAGACTTTCCATTAAGTGTGCATGgtttaatatgataaaatatgttattgtattgtaaaatCATTGTAACAAGAGATAATACAAACAGGTAAAATCCCTATACCGGCAGGTCGACACCATCACACTGTCACAATGTCTCATTGTGGTACTGGATTTAGTCATACATAAAATAACACTATTGGGAAAGTTATTCTCTTGGGTGATGTCACACTCTAACTAAAGCTGGAAAAGATGATtgattatacagtaccagtcaaacgttttgACACACCTTCCCATCCAATGTTtatctttatttcctttatttaacttattttatacattgcagattaatataaaaaagggcAGAAAATAAGTGTAATATTCCCTGGGCTGTTTTACTAAAAGGCTACAGTAACTGGATTGAGGGTTATGTGCACAATCTGGAAGATAGCTGGGTAATTGCCTTTGTTTGCTGTACTGAAACGTTTTTCAcgttttagctagcttgctagctagttagttactaactaactaagtgactgtagaaaaaaaaactaagatttAATCTAACTACAGTCCTCCCTACAGGCTTCACTAAACTACCTCTCCAGGCAAATAACATGGGCACAGCATCCTTCTTCAATTTTTACATTCCAACCAATGTCTTAAAGAAGCACTCTTTTATAAAGTGTTCTGAACTTACTTTTTGGTCCATATTAATCTGTAATATCAAATCAGACATAAAATGAATTTTAACACGGCCGCTAAATGCCAAATACAGTCTAGCTATGCGTGCAAACACTCTTATAAGACCAGACTAACCACGGGAGgatattagctagcttgctagctagctaagcaggCTGCTCTAAAGAGCTATGGCTTAACTAACTTTACCTCCCACTTGTTTTGACTTTAAAGTGAGAAAATAACCAGTTCAGGGTTAATCAAGTCATAGCCAAAGAACCAgctttagctagcacaATAATATACAATCTAAATTAAAATGGTGATCTCTACCGATGTAGTAAATCCATTCACGGTAAAGGGATCTTTGGGGAAACTATGGAAGGTTTGACCCTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194393 True 1306 lncRNA 0.35 2 22956811 22958211

Neighbor

gene id symbol gene type direction distance location
tyms tyms coding upstream 17552 22934665 ~ 22939259 (+)
clul1 NA coding upstream 24100 22921010 ~ 22932711 (+)
LOC111194171 NA coding upstream 59820 22893635 ~ 22896991 (+)
hacd1 hacd1,LOC107702201,LOC107571282,LOC107568855,LOC107691470 coding upstream 86671 22854584 ~ 22870140 (+)
ncf2 ncf2 coding upstream 238246 22703645 ~ 22718565 (+)
LOC103031382 NA coding downstream 33251 22991462 ~ 23003994 (+)
adcyap1 adcyap1 coding downstream 58570 23016781 ~ 23022412 (+)
trnat-cgu NA coding downstream 106817 23065028 ~ 23065099 (+)
trnaa-cgc_2 NA coding downstream 107076 23065287 ~ 23065358 (+)
smchd1 smchd1 coding downstream 232253 23190464 ~ 23250746 (+)
G143623 enosf1,LOC107086472 non-coding upstream 2212 22951313 ~ 22954599 (+)
G143621 enosf1 non-coding upstream 14442 22939934 ~ 22942369 (+)
G143382 NA non-coding upstream 157983 22754052 ~ 22798828 (+)
G143375 LOC101487086,LOC103370675 non-coding upstream 210003 22745712 ~ 22746808 (+)
G143374 NA non-coding upstream 211165 22743634 ~ 22745646 (+)
G143627 NA non-coding downstream 57 22958268 ~ 22960220 (+)
G143642 NA non-coding downstream 110163 23068374 ~ 23069875 (+)
G143674 NA non-coding downstream 156826 23115037 ~ 23115258 (+)
G143675 NA non-coding downstream 172075 23130286 ~ 23134140 (+)
G143683 NA non-coding downstream 187840 23146051 ~ 23179684 (+)
G143324 NA other upstream 346364 22535685 ~ 22610447 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other upstream 1048497 21811291 ~ 21908314 (+)
G143122 LOC108436138 other upstream 1310106 21645905 ~ 21646705 (+)
LOC103047556 LOC108436107,LOC108267807 other upstream 1345129 21598682 ~ 21611682 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 1377087 21569082 ~ 21579724 (+)
LOC111194251 NA other downstream 426957 23385168 ~ 23395240 (+)
LOC111194174 NA other downstream 445477 23403688 ~ 23406894 (+)
G143836 NA other downstream 869737 23827948 ~ 23916082 (+)
ppp3ca ppp3ca,LOC103369319 other downstream 1478168 24436379 ~ 24602402 (+)
G144017 NA other downstream 1748872 24707083 ~ 24711533 (+)

Expression


Co-expression Network