LOC111194251


Basic Information

Item Value
gene id LOC111194251
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 23385168 ~ 23395240 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU194568
CAGCGCTTTAATGCGACTCTGAAAGGAGATCAGTTTGTTCTCAACATTCAGGAAACTGTAGAAGAAGATTCTGGAACATATTTCTGTGGGAGAGTGAAGACTGATGTTACAGAGTTTGGATCTGGAACGCTTCTGATCTTTAACGaaGAAAAGTCTCAGAAGGGAACTCTGACTGAACTAAAGGTGAAAAGTGGAAAATCTGCAGGTTCACTCCAGTGTTCAGTACTAATGGCTACTTTAAGCTGTTCAGGAGATCACAGTGTGTACTGGTTCAGACCCGACTCAGGAGAACCTCGTCCAGGAATCATCTTCACTCATGGAGACTCCAGCAGTCAGTGTACGAGGAGTTCTGAGACTCCTACACAGAGCTGTATCTACAAACTCCCCAAGAACAACCTCAGCCTCTCTGATGCTGGAACTTACTACTGTGCTGTAGCTGCATGTGGAGAGACGGTAGATGTTGTTGGAACTGAACAACATGTGGAAGACAGAAGTAATTGGATTGTTGCTGCCTTTACAATATTCAGTGTGATCTCTGTTATTCTGAATGTGGTTCTGGCTGTTCTGCTTCTTAAGAAGCAACAGAAAGGTTGTCAAAAAGATCCTTCAAGTCGCAaaaatcagg
>TU194569
CAGCGCTTTAATGCGACTCTGAAAGGAGATCAGTTTGTTCTCAACATTCAGGAAACTGTAGAAGAAGATTCTGGAACATATTTCTGTGGGAGAGTGAAGACTGATGTTACAGAGTTTGGATCTGGAACGCTTCTGATCTTTAACGaaGAAAAGTCTCAGAAGGGAACTCTGACTGAACTAAAGGTGAAAAGTGGAAAATCTGCAGGTTCACTCCAGTGTTCAGTACTAATGGCTACTTTAAGCTGTTCAGGAGATCACAGTGTGTACTGGTTCAGACCCGACTCAGGAGAACCTCGTCCAGGAATCATCTTCACTCATGGAGACTCCAGCAGTCAGTGTACGAGGAGTTCTGAGACTGTTTCTCCACACAGGCGTATCTAAAACCCCAAGAACAACCTCAGCCTCTCTGATGCTGGAACTTACTACTGTGCTGTAGCTGCATGTGGAGAGACGGAAGATGTTGTTCAAACTGAACCCCATATGAAAGACAGAAGTAATTGGATTGTTGCTGCCTTGTCAATATTCAGTGTGATCTCTGTTATTGTGATTGTGGTTCTGGCTTTTCTGCttcttaaaaagcaacagaaagGTTGTCGTAAAGATCCTCCAAGTCGCACAAATcag
>TU194570
GCGCTTTAATGCGACTCTGAAAGGAGATCAGTTTGTTCTCAACATTAATGAAACTGTAGAAGAAGATTCTGGAACATATTTCTGTGTGAGAGTGAAGAGTGATGTTCCAGAGTTTGGATCTGGAACGCTTCTGATCTTTAACGaaGAAAAGTCTCAGAAGGGAACTCTGACTGAACTAAAGGTGAAAAGTGGAAAATCTGCAGGTTCACTCCAGTGTTCAGTACTAATGGCTACTTTAAGCTGTTCAGGAGATCACAGTGTGTACTGGTTCAGACCCGACTCAGGAAAACCTCGTCCAGGAATCATCTTCACTCATGGAGACTCCAGCAGTCCGTGTACGAGGAGTTCTGAGACTGTTTCTCCTACACAGAGCTGTATCTACAAACTCCCCAAGAACAACCTCAGCCTCTCTGATGCTGGAACTTACTACTGTGCTGTAGCTGCATGTGGAGAGACGGTAGATGTTGTTGGAACTGAACAACATGTGGAAGACAGAAGTAATTGGATTGTTGCTGCCTTTACAATATTCAGTGTGATCTCTGTTATTCTGAATGTGGTTCTGGCTGTTCTGCTTCTTAAGAAGCAACAGAAAGGTTGTCAAAAAGATCCTTCAAGTCGCAaaaatcagg
>TU194571
CAGCGCTTTAATGCGACTCTGAAAGGAGATCAGTTTGTTCTCAACATTCAGGAAACTGTAGAAGAAGATTCTGGAACATATTTCTGTGGGAGAGTGAAGACTGATGTTACAGAGTTTGGATCTGGAACGCTTCTGATCTTTAACGaaGAAAAGTCTCAGAAGGGAACTCTGACTGAACTAAAGGTGAAAAGTGGAAAATCTGCAGGTTCACTCCAGTGTTCAGTACTAATGGCTACTTTAAGCTGTTCAGGAGATCACAGTGTGTACTGGTTCAGACCCGACTCAGGAAAACCTCGTCCAGGAATCATCTTCACTCATGGAGACTCCAGCAGTCCGTGTACGAGGAGTTCTGAGACTGTTTCTCCTACACAGAGCTGTATCTACAAACTCCCCAAGAACAACCTCAGCCTCTCTGATGCTGGAACTTACTACTGTGCTGTAGCTGCATGTGGAGAGACGGTAGATGTTGTTGGAACTGAACAACATGTGGAAGACAGAAGTAATTGGATTGTTGCTGCCTTTACAATATTCAGTGTGATCTCTGTTATTCTGAATGTGGTTCTGGCTGTTCTGCTTCTTAAGAAGCAACAGAAAGGTTGTCAAAAAGATCCTTCAAGTCGCAaaaatcagg
>XM_022677727.1
ATGGAAAGCTGCCTCAGCCTGTTAGTAACTCGACAATTTCAACAGCGCTTTAATGCGACTCTGAAAGGAGATCAGTTTGTTCTCAACATTAATGAAACTGTAGAAGAAGATTCTGGAACATATTTCTGTGTGAGAGTGAAGAGTGATGTTCCAGAGTTTGGATCTGGAACGCTTCTGATCTTTAACGaaGAAAAGTCTCAGAAGGGAACTCTGACTGAACTAAAGGTGAAAAGTGGAAAATCTGCAGGTTCACTCCAGTGTTCAGTACTAATGGCTACTTTAAGCTGTTCAGGAGATCACAGTGTGTACTGGTTCAGACCCGACTCAGGAAAACCTCGTCCAGGAATCATCTTCACTCATGGAGACTCCAGCAGTCCGTGTACGAGGAGTTCTGAGACTGTTTCTCCTACACAGAGCTGTATCTACAAACTCCCCAAGAACAACCTCAGCCTCTCTGATGCTGGAACTTACTACTGTGCTGTAGCTGCATGTGGAGAGACGGTAGATGTTGTTGGAACTGAACAACATGTGGAAGACAGAAGTAATTGGATTGTTGCTGCCTTTACAATATTCAGTGTGATCTCTGTTATTCTGAATGTGGTTCTGGCTGTTCTGCTTCTTAAGAAGCAACAGAAAGGTTag

Function

GO:

id name namespace
GO:0010035 response to inorganic substance biological_process
GO:0010038 response to metal ion biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194568 False 625 TUCP 0.44 5 23385168 23395240
TU194569 False 624 lncRNA 0.44 4 23385168 23386100
TU194570 False 629 TUCP 0.43 4 23394286 23395240
TU194571 False 631 TUCP 0.44 4 23385168 23395240
XM_022677727.1 True 642 mRNA 0.43 4 23394210 23395111

Neighbor

gene id symbol gene type direction distance location
emilin2 NA coding upstream 94543 23255677 ~ 23290625 (+)
smchd1 smchd1 coding upstream 134422 23190464 ~ 23250746 (+)
trnaa-cgc_2 NA coding upstream 319810 23065287 ~ 23065358 (+)
trnat-cgu NA coding upstream 320069 23065028 ~ 23065099 (+)
adcyap1 adcyap1 coding upstream 362756 23016781 ~ 23022412 (+)
LOC103023765 NA coding downstream 40354 23435594 ~ 23442090 (+)
LOC103024399 pde5a,pde5ab coding downstream 177563 23572803 ~ 23664047 (+)
LOC103024717 LOC108436153,LOC108267195,LOC107730122,LOC559800,LOC107698664,LOC107559837 coding downstream 315268 23710508 ~ 23734928 (+)
LOC103035300 cacnb2,LOC102289395 coding downstream 385012 23780252 ~ 23905504 (+)
arl5b arl5b,LOC103034648,LOC100708858,LOC107591025,LOC103373092 coding downstream 550863 23946103 ~ 23971572 (+)
LOC111194183 NA non-coding upstream 57358 23323922 ~ 23327810 (+)
G143707 NA non-coding upstream 72700 23307061 ~ 23312468 (+)
G143702 NA non-coding upstream 86778 23297810 ~ 23298390 (+)
G143701 NA non-coding upstream 89309 23295473 ~ 23295859 (+)
G143699 NA non-coding upstream 90780 23294066 ~ 23294388 (+)
LOC111194184 NA non-coding downstream 60533 23455773 ~ 23457306 (+)
G143776 NA non-coding downstream 81330 23476570 ~ 23657120 (+)
LOC103022725 NA non-coding downstream 123081 23518321 ~ 23520504 (+)
LOC111194207 NA non-coding downstream 128732 23523972 ~ 23525935 (+)
LOC111194209 NA non-coding downstream 130783 23526023 ~ 23528364 (+)
G143324 NA other upstream 774721 22535685 ~ 22610447 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other upstream 1476854 21811291 ~ 21908314 (+)
G143122 LOC108436138 other upstream 1738463 21645905 ~ 21646705 (+)
LOC103047556 LOC108436107,LOC108267807 other upstream 1773486 21598682 ~ 21611682 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 1805444 21569082 ~ 21579724 (+)
LOC111194174 NA other downstream 8448 23403688 ~ 23406894 (+)
G143836 NA other downstream 432708 23827948 ~ 23916082 (+)
ppp3ca ppp3ca,LOC103369319 other downstream 1041139 24436379 ~ 24602402 (+)
G144017 NA other downstream 1311843 24707083 ~ 24711533 (+)
LOC111188189 NA other downstream 1461532 24856772 ~ 24876737 (+)

Expression


Co-expression Network